Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
ERCC3P19447 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
ERCC3P19447 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC18.14■□□□□ 0.5
ERCC3P19447 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
ERCC3P19447 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
ERCC3P19447 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC18.14■□□□□ 0.49
ERCC3P19447 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.14■□□□□ 0.49
ERCC3P19447 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.14■□□□□ 0.49
ERCC3P19447 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.14■□□□□ 0.49
ERCC3P19447 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.14■□□□□ 0.49
ERCC3P19447 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
ERCC3P19447 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC18.14■□□□□ 0.49
ERCC3P19447 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.14■□□□□ 0.49
ERCC3P19447 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.14■□□□□ 0.49
ERCC3P19447 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC18.14■□□□□ 0.49
ERCC3P19447 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
ERCC3P19447 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC18.14■□□□□ 0.49
ERCC3P19447 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC18.14■□□□□ 0.49
ERCC3P19447 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC18.14■□□□□ 0.49
ERCC3P19447 NOP2-211ENST00000540228 668 ntTSL 2 BASIC18.14■□□□□ 0.49
ERCC3P19447 AL583810.1-201ENST00000553344 1045 ntBASIC18.14■□□□□ 0.49
ERCC3P19447 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC18.14■□□□□ 0.49
ERCC3P19447 MIR4525-201ENST00000580000 75 ntBASIC18.14■□□□□ 0.49
ERCC3P19447 MIR4538-201ENST00000581377 78 ntBASIC18.14■□□□□ 0.49
ERCC3P19447 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.14■□□□□ 0.49
ERCC3P19447 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.14■□□□□ 0.49
ERCC3P19447 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.14■□□□□ 0.49
ERCC3P19447 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
ERCC3P19447 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.14■□□□□ 0.49
ERCC3P19447 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.14■□□□□ 0.49
ERCC3P19447 AP001282.1-201ENST00000531301 1499 ntBASIC18.14■□□□□ 0.49
ERCC3P19447 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ERCC3P19447 REXO1L1P-202ENST00000608646 1974 ntBASIC18.13■□□□□ 0.49
ERCC3P19447 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC18.13■□□□□ 0.49
ERCC3P19447 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
ERCC3P19447 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.13■□□□□ 0.49
ERCC3P19447 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
ERCC3P19447 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.13■□□□□ 0.49
ERCC3P19447 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
ERCC3P19447 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
ERCC3P19447 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ERCC3P19447 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ERCC3P19447 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.13■□□□□ 0.49
ERCC3P19447 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ERCC3P19447 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ERCC3P19447 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
ERCC3P19447 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ERCC3P19447 AC099336.1-201ENST00000417053 1171 ntBASIC18.13■□□□□ 0.49
ERCC3P19447 SOCS2P1-201ENST00000417727 557 ntBASIC18.13■□□□□ 0.49
ERCC3P19447 RPL28-203ENST00000428193 573 ntTSL 2 BASIC18.13■□□□□ 0.49
ERCC3P19447 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ERCC3P19447 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC18.13■□□□□ 0.49
ERCC3P19447 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ERCC3P19447 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.13■□□□□ 0.49
ERCC3P19447 RPL13AP25-201ENST00000484130 612 ntBASIC18.13■□□□□ 0.49
ERCC3P19447 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ERCC3P19447 AP001889.1-201ENST00000525414 633 ntBASIC18.13■□□□□ 0.49
ERCC3P19447 AC068587.3-201ENST00000526613 355 ntBASIC18.13■□□□□ 0.49
ERCC3P19447 PTP4A1P2-201ENST00000546033 454 ntBASIC18.13■□□□□ 0.49
ERCC3P19447 RPL28-207ENST00000558815 616 ntTSL 2 BASIC18.13■□□□□ 0.49
ERCC3P19447 AL049840.4-201ENST00000602422 811 ntBASIC18.13■□□□□ 0.49
ERCC3P19447 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC18.13■□□□□ 0.49
ERCC3P19447 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC18.13■□□□□ 0.49
ERCC3P19447 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
ERCC3P19447 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.13■□□□□ 0.49
ERCC3P19447 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC18.13■□□□□ 0.49
ERCC3P19447 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
ERCC3P19447 AP002414.2-201ENST00000591780 3365 ntBASIC18.13■□□□□ 0.49
ERCC3P19447 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.13■□□□□ 0.49
ERCC3P19447 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.12■□□□□ 0.49
ERCC3P19447 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
ERCC3P19447 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
ERCC3P19447 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
ERCC3P19447 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.12■□□□□ 0.49
ERCC3P19447 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
ERCC3P19447 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
ERCC3P19447 AC005229.1-201ENST00000392885 409 ntBASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms