Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.26□□□□□ -0.13
HOXD4P09016 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HOXD4P09016 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HOXD4P09016 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
HOXD4P09016 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HOXD4P09016 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
HOXD4P09016 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
HOXD4P09016 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 ACA64.2-201ENST00000459014 129 ntBASIC14.26□□□□□ -0.13
HOXD4P09016 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.26□□□□□ -0.13
HOXD4P09016 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXD4P09016 SPDYE18-201ENST00000510091 1050 ntBASIC14.26□□□□□ -0.13
HOXD4P09016 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.26□□□□□ -0.13
HOXD4P09016 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.26□□□□□ -0.13
HOXD4P09016 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.26□□□□□ -0.13
HOXD4P09016 MIR6805-201ENST00000615055 62 ntBASIC14.26□□□□□ -0.13
HOXD4P09016 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.26□□□□□ -0.13
HOXD4P09016 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.26□□□□□ -0.13
HOXD4P09016 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC14.26□□□□□ -0.13
HOXD4P09016 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXD4P09016 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXD4P09016 GRK6P1-201ENST00000400595 1711 ntBASIC14.26□□□□□ -0.13
HOXD4P09016 AC022532.1-201ENST00000624563 1728 ntBASIC14.26□□□□□ -0.13
HOXD4P09016 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.26□□□□□ -0.13
HOXD4P09016 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
HOXD4P09016 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXD4P09016 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXD4P09016 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXD4P09016 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HOXD4P09016 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HOXD4P09016 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
HOXD4P09016 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXD4P09016 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXD4P09016 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXD4P09016 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXD4P09016 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HOXD4P09016 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXD4P09016 RPS2P32-201ENST00000439199 892 ntBASIC14.25□□□□□ -0.13
HOXD4P09016 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXD4P09016 AC022494.1-201ENST00000466044 728 ntBASIC14.25□□□□□ -0.13
HOXD4P09016 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXD4P09016 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXD4P09016 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXD4P09016 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXD4P09016 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXD4P09016 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXD4P09016 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
HOXD4P09016 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXD4P09016 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXD4P09016 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXD4P09016 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD4P09016 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
HOXD4P09016 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD4P09016 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD4P09016 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms