Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.11■□□□□ 0.01
SLC28A1O00337 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
SLC28A1O00337 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 AL627223.1-201ENST00000416693 442 ntBASIC15.11■□□□□ 0.01
SLC28A1O00337 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC28A1O00337 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC28A1O00337 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC28A1O00337 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.11■□□□□ 0.01
SLC28A1O00337 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.11■□□□□ 0.01
SLC28A1O00337 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.11■□□□□ 0.01
SLC28A1O00337 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.11■□□□□ 0.01
SLC28A1O00337 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC28A1O00337 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.11■□□□□ 0.01
SLC28A1O00337 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 OR2I1P-210ENST00000642037 4691 ntBASIC15.11■□□□□ 0.01
SLC28A1O00337 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC28A1O00337 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
SLC28A1O00337 AL035456.1-201ENST00000456064 1369 ntBASIC15.11■□□□□ 0.01
SLC28A1O00337 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SLC28A1O00337 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.1■□□□□ 0.01
SLC28A1O00337 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SLC28A1O00337 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.1■□□□□ 0.01
SLC28A1O00337 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.1■□□□□ 0.01
SLC28A1O00337 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SLC28A1O00337 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.1■□□□□ 0.01
SLC28A1O00337 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SLC28A1O00337 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 RBPMS2P1-201ENST00000437762 623 ntBASIC15.1■□□□□ 0.01
SLC28A1O00337 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.1■□□□□ 0.01
SLC28A1O00337 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.1■□□□□ 0.01
SLC28A1O00337 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.1■□□□□ 0.01
SLC28A1O00337 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
SLC28A1O00337 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.1■□□□□ 0.01
SLC28A1O00337 RN7SL828P-201ENST00000607615 303 ntBASIC15.1■□□□□ 0.01
SLC28A1O00337 AC007967.4-201ENST00000614700 386 ntBASIC15.1■□□□□ 0.01
SLC28A1O00337 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.1■□□□□ 0.01
SLC28A1O00337 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.1■□□□□ 0.01
SLC28A1O00337 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
SLC28A1O00337 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.1■□□□□ 0.01
SLC28A1O00337 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
SLC28A1O00337 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.1■□□□□ 0.01
SLC28A1O00337 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SLC28A1O00337 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.1■□□□□ 0.01
SLC28A1O00337 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.1■□□□□ 0.01
SLC28A1O00337 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 KRT8P12-202ENST00000472924 1397 ntBASIC15.1■□□□□ 0.01
SLC28A1O00337 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC28A1O00337 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SLC28A1O00337 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SLC28A1O00337 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.1■□□□□ 0.01
SLC28A1O00337 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
SLC28A1O00337 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
SLC28A1O00337 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.09■□□□□ 0.01
SLC28A1O00337 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC28A1O00337 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms