Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
PDZRN3Q9UPQ7 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDZRN3Q9UPQ7 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDZRN3Q9UPQ7 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC20.19■□□□□ 0.82
PDZRN3Q9UPQ7 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PDZRN3Q9UPQ7 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC20.19■□□□□ 0.82
PDZRN3Q9UPQ7 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 CICP13-201ENST00000422015 2789 ntBASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 AC136621.1-201ENST00000624017 2304 ntBASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PDZRN3Q9UPQ7 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 SSR4P1-203ENST00000599569 2260 ntBASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 PTK7-212ENST00000476760 902 ntTSL 2 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 AC025048.3-201ENST00000590609 569 ntBASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 AC010319.3-201ENST00000597028 470 ntBASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 AC233724.13-201ENST00000598383 410 ntBASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 AC005702.4-201ENST00000618393 416 ntBASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
PDZRN3Q9UPQ7 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms