Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 AC007787.1-201ENST00000588095 1583 ntBASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 CELP-203ENST00000624767 2414 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 SLC9A7P1-202ENST00000556476 2239 ntBASIC20.21■□□□□ 0.83
TRIM35Q9UPQ4 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 FES-204ENST00000414248 2327 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 MPV17-208ENST00000405076 603 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 ACTG1P3-201ENST00000431775 1114 ntBASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 USP32P1-208ENST00000506594 1164 ntBASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 HADH-212ENST00000638621 741 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM35Q9UPQ4 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 HYMAI-201ENST00000635591 3347 ntBASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 AC046158.3-201ENST00000624947 2558 ntBASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 GHSR-202ENST00000427970 912 ntBASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 U91328.1-201ENST00000437528 223 ntBASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 AC093433.1-201ENST00000458048 571 ntBASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 GIMAP3P-201ENST00000495150 836 ntBASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 AC008735.3-201ENST00000596646 500 ntBASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM35Q9UPQ4 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 AC138035.3-201ENST00000622706 2791 ntBASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM35Q9UPQ4 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms