Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 AC105250.1-201ENST00000509378 2057 ntBASIC16.49■□□□□ 0.23
CDH9Q9ULB4 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 U91328.1-201ENST00000437528 223 ntBASIC16.48■□□□□ 0.23
CDH9Q9ULB4 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 AC046158.3-201ENST00000624947 2558 ntBASIC16.48■□□□□ 0.23
CDH9Q9ULB4 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.48■□□□□ 0.23
CDH9Q9ULB4 AC008894.3-201ENST00000624324 3103 ntBASIC16.48■□□□□ 0.23
CDH9Q9ULB4 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 RPL5P21-201ENST00000404620 815 ntBASIC16.47■□□□□ 0.23
CDH9Q9ULB4 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 AC106886.1-201ENST00000568660 600 ntBASIC16.47■□□□□ 0.23
CDH9Q9ULB4 MIR5189-201ENST00000577370 114 ntBASIC16.47■□□□□ 0.23
CDH9Q9ULB4 CLUHP6-201ENST00000580789 941 ntBASIC16.47■□□□□ 0.23
CDH9Q9ULB4 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms