Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 KLF2P3-201ENST00000451977 1087 ntBASIC16.21■□□□□ 0.19
PCDH9Q9HC56 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 AC125807.1-201ENST00000483097 614 ntBASIC16.21■□□□□ 0.19
PCDH9Q9HC56 AC067863.1-201ENST00000494933 530 ntBASIC16.21■□□□□ 0.19
PCDH9Q9HC56 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 AL133215.2-201ENST00000609242 977 ntBASIC16.21■□□□□ 0.19
PCDH9Q9HC56 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PCDH9Q9HC56 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
PCDH9Q9HC56 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PCDH9Q9HC56 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
PCDH9Q9HC56 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
PCDH9Q9HC56 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.21■□□□□ 0.18
PCDH9Q9HC56 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.21■□□□□ 0.18
PCDH9Q9HC56 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 AZGP1P1-201ENST00000411909 902 ntBASIC16.2■□□□□ 0.18
PCDH9Q9HC56 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 AC051619.7-201ENST00000568314 623 ntBASIC16.2■□□□□ 0.18
PCDH9Q9HC56 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.2■□□□□ 0.18
PCDH9Q9HC56 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PCDH9Q9HC56 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 AL607033.1-201ENST00000623900 1599 ntBASIC16.19■□□□□ 0.18
PCDH9Q9HC56 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.19■□□□□ 0.18
PCDH9Q9HC56 PMS2P2-201ENST00000425039 1128 ntBASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms