Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC13.95□□□□□ -0.18
MMP28Q9H239 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.95□□□□□ -0.18
MMP28Q9H239 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MMP28Q9H239 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.95□□□□□ -0.18
MMP28Q9H239 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC13.95□□□□□ -0.18
MMP28Q9H239 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.94□□□□□ -0.18
MMP28Q9H239 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
MMP28Q9H239 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.94□□□□□ -0.18
MMP28Q9H239 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.94□□□□□ -0.18
MMP28Q9H239 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.94□□□□□ -0.18
MMP28Q9H239 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC13.94□□□□□ -0.18
MMP28Q9H239 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC13.94□□□□□ -0.18
MMP28Q9H239 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
MMP28Q9H239 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
MMP28Q9H239 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC13.94□□□□□ -0.18
MMP28Q9H239 MIR574-201ENST00000385209 96 ntBASIC13.94□□□□□ -0.18
MMP28Q9H239 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 ELK2BP-201ENST00000415014 1224 ntBASIC13.94□□□□□ -0.18
MMP28Q9H239 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC13.94□□□□□ -0.18
MMP28Q9H239 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC13.94□□□□□ -0.18
MMP28Q9H239 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC13.94□□□□□ -0.18
MMP28Q9H239 SLC25A1P1-201ENST00000528351 927 ntBASIC13.94□□□□□ -0.18
MMP28Q9H239 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC13.94□□□□□ -0.18
MMP28Q9H239 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC13.94□□□□□ -0.18
MMP28Q9H239 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC13.94□□□□□ -0.18
MMP28Q9H239 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC13.94□□□□□ -0.18
MMP28Q9H239 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC13.94□□□□□ -0.18
MMP28Q9H239 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
MMP28Q9H239 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC13.94□□□□□ -0.18
MMP28Q9H239 MIR1199-201ENST00000621445 119 ntBASIC13.94□□□□□ -0.18
MMP28Q9H239 AC008735.5-201ENST00000623544 497 ntBASIC13.94□□□□□ -0.18
MMP28Q9H239 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 DGCR9-201ENST00000609630 2415 ntBASIC13.94□□□□□ -0.18
MMP28Q9H239 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
MMP28Q9H239 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
MMP28Q9H239 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
MMP28Q9H239 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MMP28Q9H239 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC13.94□□□□□ -0.18
MMP28Q9H239 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
MMP28Q9H239 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC13.93□□□□□ -0.18
MMP28Q9H239 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 AC136759.1-202ENST00000530858 2194 ntBASIC13.93□□□□□ -0.18
MMP28Q9H239 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
MMP28Q9H239 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
MMP28Q9H239 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC13.93□□□□□ -0.18
MMP28Q9H239 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
MMP28Q9H239 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
MMP28Q9H239 AC006504.4-201ENST00000592118 1568 ntBASIC13.93□□□□□ -0.18
MMP28Q9H239 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.93□□□□□ -0.18
MMP28Q9H239 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
MMP28Q9H239 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
MMP28Q9H239 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
MMP28Q9H239 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
MMP28Q9H239 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.93□□□□□ -0.18
MMP28Q9H239 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
MMP28Q9H239 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC13.93□□□□□ -0.18
MMP28Q9H239 KRT18P27-201ENST00000427733 1299 ntBASIC13.93□□□□□ -0.18
MMP28Q9H239 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MMP28Q9H239 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC13.93□□□□□ -0.18
MMP28Q9H239 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC13.93□□□□□ -0.18
MMP28Q9H239 CYGB-205ENST00000590175 830 ntTSL 3 BASIC13.93□□□□□ -0.18
MMP28Q9H239 AL805961.1-202ENST00000641562 540 ntBASIC13.93□□□□□ -0.18
MMP28Q9H239 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms