Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HPGD-203ENST00000422112 805 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 BRI3P1-201ENST00000440440 378 ntBASIC15.14■□□□□ 0.01
VPS13AQ96RL7 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 STUB1-204ENST00000564370 875 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 AC073911.3-201ENST00000624401 631 ntBASIC15.14■□□□□ 0.01
VPS13AQ96RL7 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 AC012158.2-201ENST00000536546 354 ntBASIC15.14■□□□□ 0.01
VPS13AQ96RL7 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS13AQ96RL7 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.13■□□□□ 0.01
VPS13AQ96RL7 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 AL353637.1-201ENST00000451571 732 ntBASIC15.13■□□□□ 0.01
VPS13AQ96RL7 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 AC009779.1-201ENST00000551138 283 ntBASIC15.13■□□□□ 0.01
VPS13AQ96RL7 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 AC025262.2-201ENST00000623975 1056 ntBASIC15.13■□□□□ 0.01
VPS13AQ96RL7 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VPS13AQ96RL7 AL157791.1-201ENST00000553667 1699 ntBASIC15.12■□□□□ 0.01
VPS13AQ96RL7 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 OR2K2-202ENST00000374428 1038 ntBASIC15.12■□□□□ 0.01
VPS13AQ96RL7 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 AP002490.2-201ENST00000524791 560 ntBASIC15.12■□□□□ 0.01
VPS13AQ96RL7 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 AC106820.3-201ENST00000561653 397 ntBASIC15.12■□□□□ 0.01
VPS13AQ96RL7 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 AL031713.1-201ENST00000564813 661 ntBASIC15.12■□□□□ 0.01
VPS13AQ96RL7 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 ME2P1-201ENST00000426028 1970 ntBASIC15.12■□□□□ 0.01
VPS13AQ96RL7 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 BX323043.1-201ENST00000641006 1765 ntBASIC15.12■□□□□ 0.01
VPS13AQ96RL7 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 KRT8P14-201ENST00000414254 1442 ntBASIC15.12■□□□□ 0.01
VPS13AQ96RL7 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 RCC2P8-201ENST00000502779 1035 ntBASIC15.12■□□□□ 0.01
VPS13AQ96RL7 ALG1L6P-201ENST00000515248 758 ntBASIC15.12■□□□□ 0.01
VPS13AQ96RL7 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS13AQ96RL7 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms