Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 SNX18-202ENST00000343017 3140 ntBASIC16.96■□□□□ 0.31
CCDC42Q96M95 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.96■□□□□ 0.31
CCDC42Q96M95 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 MIR346-201ENST00000362234 95 ntBASIC16.96■□□□□ 0.31
CCDC42Q96M95 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.96■□□□□ 0.31
CCDC42Q96M95 RN7SL589P-201ENST00000481268 310 ntBASIC16.96■□□□□ 0.31
CCDC42Q96M95 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
CCDC42Q96M95 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.96■□□□□ 0.31
CCDC42Q96M95 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.96■□□□□ 0.31
CCDC42Q96M95 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.96■□□□□ 0.31
CCDC42Q96M95 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
CCDC42Q96M95 AC091812.2-201ENST00000619081 385 ntBASIC16.96■□□□□ 0.31
CCDC42Q96M95 ZNF259P1-201ENST00000407656 1365 ntBASIC16.96■□□□□ 0.31
CCDC42Q96M95 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
CCDC42Q96M95 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.96■□□□□ 0.31
CCDC42Q96M95 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
CCDC42Q96M95 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.96■□□□□ 0.31
CCDC42Q96M95 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC42Q96M95 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.96■□□□□ 0.3
CCDC42Q96M95 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.96■□□□□ 0.3
CCDC42Q96M95 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
CCDC42Q96M95 TK2-221ENST00000620035 5060 ntTSL 2 BASIC16.96■□□□□ 0.3
CCDC42Q96M95 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
CCDC42Q96M95 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.96■□□□□ 0.3
CCDC42Q96M95 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.3
CCDC42Q96M95 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 HNRNPUP1-201ENST00000554987 333 ntBASIC16.95■□□□□ 0.3
CCDC42Q96M95 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 AP000842.3-202ENST00000569238 1080 ntBASIC16.95■□□□□ 0.3
CCDC42Q96M95 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 AC097359.3-201ENST00000603982 1210 ntBASIC16.95■□□□□ 0.3
CCDC42Q96M95 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC42Q96M95 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 IL9RP2-201ENST00000423948 1312 ntBASIC16.95■□□□□ 0.3
CCDC42Q96M95 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
CCDC42Q96M95 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC42Q96M95 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC42Q96M95 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC42Q96M95 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms