Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 AZGP1P1-201ENST00000411909 902 ntBASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 FAM207CP-201ENST00000443486 507 ntBASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 TEX48-202ENST00000612244 662 ntTSL 3 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CHMP4CQ96CF2 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 REXO1L1P-202ENST00000608646 1974 ntBASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 HIST3H2BA-201ENST00000436555 524 ntBASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 EEF1DP4-201ENST00000446006 880 ntBASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 AL132655.2-201ENST00000596276 594 ntBASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.72■□□□□ 0.59
CHMP4CQ96CF2 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 AL450472.2-201ENST00000603663 1156 ntBASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 AC009118.2-201ENST00000613275 655 ntBASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 AC126177.1-201ENST00000547829 2218 ntBASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 KRT8P37-201ENST00000451609 1420 ntBASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CHMP4CQ96CF2 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms