Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC13.47□□□□□ -0.25
ABCA4P78363 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC13.47□□□□□ -0.25
ABCA4P78363 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 C1QBPP1-201ENST00000400117 770 ntBASIC13.47□□□□□ -0.25
ABCA4P78363 KRT18P43-201ENST00000469825 1281 ntBASIC13.47□□□□□ -0.25
ABCA4P78363 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.47□□□□□ -0.25
ABCA4P78363 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
ABCA4P78363 CMC2-214ENST00000565925 640 ntTSL 5 BASIC13.47□□□□□ -0.25
ABCA4P78363 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC13.47□□□□□ -0.25
ABCA4P78363 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.47□□□□□ -0.25
ABCA4P78363 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC13.47□□□□□ -0.25
ABCA4P78363 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC13.47□□□□□ -0.25
ABCA4P78363 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
ABCA4P78363 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
ABCA4P78363 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
ABCA4P78363 OS9-205ENST00000413095 1660 ntTSL 2 BASIC13.47□□□□□ -0.25
ABCA4P78363 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
ABCA4P78363 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
ABCA4P78363 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC13.47□□□□□ -0.25
ABCA4P78363 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
ABCA4P78363 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
ABCA4P78363 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC13.47□□□□□ -0.25
ABCA4P78363 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
ABCA4P78363 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
ABCA4P78363 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC13.47□□□□□ -0.25
ABCA4P78363 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC13.47□□□□□ -0.25
ABCA4P78363 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC13.47□□□□□ -0.25
ABCA4P78363 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.47□□□□□ -0.25
ABCA4P78363 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.47□□□□□ -0.25
ABCA4P78363 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.47□□□□□ -0.25
ABCA4P78363 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 AL450472.2-201ENST00000603663 1156 ntBASIC13.47□□□□□ -0.25
ABCA4P78363 AC107373.2-201ENST00000607735 490 ntBASIC13.47□□□□□ -0.25
ABCA4P78363 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
ABCA4P78363 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.47□□□□□ -0.25
ABCA4P78363 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.47□□□□□ -0.25
ABCA4P78363 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC13.47□□□□□ -0.25
ABCA4P78363 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.47□□□□□ -0.25
ABCA4P78363 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC13.47□□□□□ -0.25
ABCA4P78363 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
ABCA4P78363 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC13.46□□□□□ -0.25
ABCA4P78363 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
ABCA4P78363 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
ABCA4P78363 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
ABCA4P78363 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.46□□□□□ -0.25
ABCA4P78363 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.46□□□□□ -0.25
ABCA4P78363 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.46□□□□□ -0.25
ABCA4P78363 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC13.46□□□□□ -0.25
ABCA4P78363 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
ABCA4P78363 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.46□□□□□ -0.25
ABCA4P78363 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC13.46□□□□□ -0.25
ABCA4P78363 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC13.46□□□□□ -0.25
ABCA4P78363 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
ABCA4P78363 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC13.46□□□□□ -0.26
ABCA4P78363 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
ABCA4P78363 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.26
ABCA4P78363 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
ABCA4P78363 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
ABCA4P78363 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.46□□□□□ -0.26
ABCA4P78363 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC13.46□□□□□ -0.26
ABCA4P78363 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
ABCA4P78363 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC13.46□□□□□ -0.26
ABCA4P78363 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.26
ABCA4P78363 MIR1202-201ENST00000408529 83 ntBASIC13.46□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms