Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.82□□□□□ -0.04
SOX3P41225 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
SOX3P41225 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
SOX3P41225 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.82□□□□□ -0.04
SOX3P41225 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.82□□□□□ -0.04
SOX3P41225 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.82□□□□□ -0.04
SOX3P41225 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
SOX3P41225 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC14.82□□□□□ -0.04
SOX3P41225 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.82□□□□□ -0.04
SOX3P41225 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SOX3P41225 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
SOX3P41225 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 AC069224.1-201ENST00000566372 1715 ntBASIC14.81□□□□□ -0.04
SOX3P41225 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.81□□□□□ -0.04
SOX3P41225 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
SOX3P41225 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.81□□□□□ -0.04
SOX3P41225 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.81□□□□□ -0.04
SOX3P41225 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.81□□□□□ -0.04
SOX3P41225 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
SOX3P41225 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 MIR661-201ENST00000384842 89 ntBASIC14.81□□□□□ -0.04
SOX3P41225 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.81□□□□□ -0.04
SOX3P41225 AC236430.1-201ENST00000402231 743 ntBASIC14.81□□□□□ -0.04
SOX3P41225 AC009477.1-201ENST00000452936 217 ntBASIC14.81□□□□□ -0.04
SOX3P41225 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
SOX3P41225 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.81□□□□□ -0.04
SOX3P41225 SERBP1P3-201ENST00000459980 809 ntBASIC14.81□□□□□ -0.04
SOX3P41225 RN7SL618P-201ENST00000477850 296 ntBASIC14.81□□□□□ -0.04
SOX3P41225 AL512361.1-201ENST00000554200 418 ntBASIC14.81□□□□□ -0.04
SOX3P41225 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.81□□□□□ -0.04
SOX3P41225 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.81□□□□□ -0.04
SOX3P41225 LINC02084-201ENST00000606069 1096 ntBASIC14.81□□□□□ -0.04
SOX3P41225 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
SOX3P41225 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.81□□□□□ -0.04
SOX3P41225 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
SOX3P41225 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.81□□□□□ -0.04
SOX3P41225 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.81□□□□□ -0.04
SOX3P41225 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.81□□□□□ -0.04
SOX3P41225 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.81□□□□□ -0.04
SOX3P41225 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.81□□□□□ -0.04
SOX3P41225 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.81□□□□□ -0.04
SOX3P41225 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.81□□□□□ -0.04
SOX3P41225 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 AC136621.1-201ENST00000624017 2304 ntBASIC14.81□□□□□ -0.04
SOX3P41225 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.81□□□□□ -0.04
SOX3P41225 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SOX3P41225 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.8□□□□□ -0.04
SOX3P41225 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.8□□□□□ -0.04
SOX3P41225 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.8□□□□□ -0.04
SOX3P41225 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
SOX3P41225 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.8□□□□□ -0.04
SOX3P41225 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.8□□□□□ -0.04
SOX3P41225 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
SOX3P41225 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.8□□□□□ -0.04
SOX3P41225 SSR4P1-203ENST00000599569 2260 ntBASIC14.8□□□□□ -0.04
SOX3P41225 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.8□□□□□ -0.04
SOX3P41225 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.8□□□□□ -0.04
SOX3P41225 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.8□□□□□ -0.04
SOX3P41225 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.8□□□□□ -0.04
SOX3P41225 AC002472.2-201ENST00000442739 958 ntBASIC14.8□□□□□ -0.04
SOX3P41225 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.8□□□□□ -0.04
SOX3P41225 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.8□□□□□ -0.04
SOX3P41225 RN7SL204P-201ENST00000582831 262 ntBASIC14.8□□□□□ -0.04
SOX3P41225 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.8□□□□□ -0.04
SOX3P41225 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.8□□□□□ -0.04
SOX3P41225 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 AL691432.1-201ENST00000596308 1422 ntBASIC14.8□□□□□ -0.04
SOX3P41225 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.8□□□□□ -0.04
SOX3P41225 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
SOX3P41225 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms