Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 INVS-201ENST00000262456 2968 ntTSL 5 BASIC15.71■□□□□ 0.11
SHOX2O60902 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 RPL5P21-201ENST00000404620 815 ntBASIC15.71■□□□□ 0.11
SHOX2O60902 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.71■□□□□ 0.11
SHOX2O60902 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.71■□□□□ 0.11
SHOX2O60902 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC15.71■□□□□ 0.11
SHOX2O60902 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC15.71■□□□□ 0.11
SHOX2O60902 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 AC074051.2-201ENST00000565115 352 ntBASIC15.71■□□□□ 0.11
SHOX2O60902 AC114341.1-201ENST00000618070 349 ntBASIC15.71■□□□□ 0.11
SHOX2O60902 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
SHOX2O60902 AC055811.4-201ENST00000624039 1754 ntBASIC15.71■□□□□ 0.11
SHOX2O60902 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC15.71■□□□□ 0.11
SHOX2O60902 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.71■□□□□ 0.11
SHOX2O60902 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
SHOX2O60902 CICP11-201ENST00000434745 2827 ntBASIC15.71■□□□□ 0.1
SHOX2O60902 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
SHOX2O60902 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC15.71■□□□□ 0.1
SHOX2O60902 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC15.7■□□□□ 0.1
SHOX2O60902 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.7■□□□□ 0.1
SHOX2O60902 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC15.7■□□□□ 0.1
SHOX2O60902 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.7■□□□□ 0.1
SHOX2O60902 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC15.7■□□□□ 0.1
SHOX2O60902 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.7■□□□□ 0.1
SHOX2O60902 AL589702.1-201ENST00000641229 1509 ntBASIC15.7■□□□□ 0.1
SHOX2O60902 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC15.7■□□□□ 0.1
SHOX2O60902 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
SHOX2O60902 AC016397.2-201ENST00000624848 1985 ntBASIC15.7■□□□□ 0.1
SHOX2O60902 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
SHOX2O60902 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15.7■□□□□ 0.1
SHOX2O60902 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 DRAXINP1-201ENST00000437611 948 ntBASIC15.7■□□□□ 0.1
SHOX2O60902 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 TPT1P11-201ENST00000458482 498 ntBASIC15.7■□□□□ 0.1
SHOX2O60902 BX005266.1-201ENST00000473402 457 ntBASIC15.7■□□□□ 0.1
SHOX2O60902 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC15.7■□□□□ 0.1
SHOX2O60902 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.7■□□□□ 0.1
SHOX2O60902 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
SHOX2O60902 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.7■□□□□ 0.1
SHOX2O60902 AL049597.2-201ENST00000565575 961 ntBASIC15.7■□□□□ 0.1
SHOX2O60902 MIR3909-201ENST00000579518 119 ntBASIC15.7■□□□□ 0.1
SHOX2O60902 GZMM-202ENST00000592501 941 ntTSL 3 BASIC15.7■□□□□ 0.1
SHOX2O60902 AC116407.4-201ENST00000623319 1061 ntBASIC15.7■□□□□ 0.1
SHOX2O60902 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.7■□□□□ 0.1
SHOX2O60902 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC15.7■□□□□ 0.1
SHOX2O60902 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.7■□□□□ 0.1
SHOX2O60902 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
SHOX2O60902 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SHOX2O60902 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
SHOX2O60902 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.7■□□□□ 0.1
SHOX2O60902 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.69■□□□□ 0.1
SHOX2O60902 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC15.69■□□□□ 0.1
SHOX2O60902 AC012569.1-201ENST00000591191 1524 ntBASIC15.69■□□□□ 0.1
SHOX2O60902 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
SHOX2O60902 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.69■□□□□ 0.1
SHOX2O60902 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
SHOX2O60902 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC15.69■□□□□ 0.1
SHOX2O60902 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.69■□□□□ 0.1
SHOX2O60902 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC15.69■□□□□ 0.1
SHOX2O60902 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
SHOX2O60902 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 RNU1-129P-201ENST00000384064 167 ntBASIC15.69■□□□□ 0.1
SHOX2O60902 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 PCED1CP-201ENST00000419887 785 ntBASIC15.69■□□□□ 0.1
SHOX2O60902 IGHV3-47-201ENST00000425060 335 ntBASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms