Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 AC099398.1-201ENST00000567919 2776 ntBASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 SDCCAG3P2-201ENST00000326105 1023 ntBASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 AC008267.1-201ENST00000474858 1069 ntBASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 FTLP10-202ENST00000505798 471 ntBASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 AC126915.1-201ENST00000522847 1038 ntBASIC29.48■■■□□ 2.31
SHROOM4Q9ULL8 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 AC011477.6-201ENST00000604980 1927 ntBASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 NKG7-204ENST00000595217 816 ntTSL 2 BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 DRD5P1-201ENST00000456605 1438 ntBASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM4Q9ULL8 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 HLA-DQB2-229ENST00000411527 1059 ntBASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 AC245884.6-201ENST00000515672 1067 ntBASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
SHROOM4Q9ULL8 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 KLK3-207ENST00000595952 969 ntTSL 3 BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC29.45■■■□□ 2.31
SHROOM4Q9ULL8 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC29.45■■■□□ 2.3
SHROOM4Q9ULL8 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC29.45■■■□□ 2.3
SHROOM4Q9ULL8 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
SHROOM4Q9ULL8 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC29.45■■■□□ 2.3
SHROOM4Q9ULL8 LINC02447-202ENST00000501888 2146 ntBASIC29.45■■■□□ 2.3
SHROOM4Q9ULL8 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
SHROOM4Q9ULL8 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
SHROOM4Q9ULL8 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
SHROOM4Q9ULL8 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 AC007274.2-201ENST00000421675 662 ntBASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 AL590640.2-201ENST00000457038 527 ntBASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 SDHD-202ENST00000525291 790 ntTSL 3 BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 AL451050.2-201ENST00000606967 682 ntBASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
SHROOM4Q9ULL8 AC024909.3-201ENST00000611513 2257 ntBASIC29.44■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms