Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 CICP13-201ENST00000422015 2789 ntBASIC19.7■□□□□ 0.74
SCN11AQ9UI33 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 SLC25A24P2-201ENST00000415059 510 ntBASIC19.7■□□□□ 0.74
SCN11AQ9UI33 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 MIR3619-201ENST00000579667 83 ntBASIC19.7■□□□□ 0.74
SCN11AQ9UI33 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 AL645939.5-201ENST00000606834 243 ntBASIC19.7■□□□□ 0.74
SCN11AQ9UI33 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SCN11AQ9UI33 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 PTPA-218ENST00000435132 618 ntTSL 2 BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 AP001505.2-201ENST00000616815 443 ntBASIC19.69■□□□□ 0.74
SCN11AQ9UI33 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC19.69■□□□□ 0.74
SCN11AQ9UI33 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 ZBTB45P1-201ENST00000452761 1456 ntBASIC19.68■□□□□ 0.74
SCN11AQ9UI33 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 AP005117.1-202ENST00000581724 1908 ntBASIC19.68■□□□□ 0.74
SCN11AQ9UI33 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 RBM38-204ENST00000371219 760 ntTSL 2 BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 AC005077.2-201ENST00000449786 690 ntBASIC19.68■□□□□ 0.74
SCN11AQ9UI33 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 EIF4HP1-201ENST00000453115 687 ntBASIC19.68■□□□□ 0.74
SCN11AQ9UI33 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 AC007663.3-201ENST00000609632 465 ntBASIC19.68■□□□□ 0.74
SCN11AQ9UI33 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 REXO1L5P-201ENST00000622260 2098 ntBASIC19.68■□□□□ 0.74
SCN11AQ9UI33 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SCN11AQ9UI33 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN11AQ9UI33 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SCN11AQ9UI33 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SCN11AQ9UI33 AC132192.2-201ENST00000596206 1147 ntBASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms