Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HPS4Q9NQG7 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HPS4Q9NQG7 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.26■□□□□ 0.19
HPS4Q9NQG7 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 INTS4P2-202ENST00000614726 2019 ntBASIC16.25■□□□□ 0.19
HPS4Q9NQG7 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 AC063926.3-201ENST00000624734 5658 ntBASIC16.25■□□□□ 0.19
HPS4Q9NQG7 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 CTBP2P5-201ENST00000454986 1264 ntBASIC16.25■□□□□ 0.19
HPS4Q9NQG7 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
HPS4Q9NQG7 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 AC093525.8-201ENST00000624099 1342 ntBASIC16.24■□□□□ 0.19
HPS4Q9NQG7 AC103702.1-201ENST00000548801 2630 ntBASIC16.24■□□□□ 0.19
HPS4Q9NQG7 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 AC134915.1-201ENST00000426461 574 ntBASIC16.24■□□□□ 0.19
HPS4Q9NQG7 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 AL450472.2-201ENST00000603663 1156 ntBASIC16.24■□□□□ 0.19
HPS4Q9NQG7 AC097359.3-201ENST00000603982 1210 ntBASIC16.24■□□□□ 0.19
HPS4Q9NQG7 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
HPS4Q9NQG7 CYP2T1P-202ENST00000641596 2535 ntBASIC16.23■□□□□ 0.19
HPS4Q9NQG7 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
HPS4Q9NQG7 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HPS4Q9NQG7 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HPS4Q9NQG7 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
HPS4Q9NQG7 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
HPS4Q9NQG7 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HPS4Q9NQG7 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.23■□□□□ 0.19
HPS4Q9NQG7 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HPS4Q9NQG7 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HPS4Q9NQG7 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HPS4Q9NQG7 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.23■□□□□ 0.19
HPS4Q9NQG7 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.23■□□□□ 0.19
HPS4Q9NQG7 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.23■□□□□ 0.19
HPS4Q9NQG7 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
HPS4Q9NQG7 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms