Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK3Q9BYB0 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 ISCA2P1-201ENST00000425548 448 ntBASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 MAGEA5-201ENST00000446757 942 ntBASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 AC073150.1-201ENST00000450406 1084 ntBASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 AL662844.4-201ENST00000606367 2838 ntBASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SHANK3Q9BYB0 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SHANK3Q9BYB0 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SHANK3Q9BYB0 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SHANK3Q9BYB0 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 TNRC18P3-201ENST00000441896 2691 ntBASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 E2F3P2-201ENST00000447755 1422 ntBASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 RPL5P21-201ENST00000404620 815 ntBASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 AL008707.1-201ENST00000422498 534 ntBASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 RPL13AP19-201ENST00000434320 584 ntBASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 AC012618.1-201ENST00000461223 412 ntBASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SHANK3Q9BYB0 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 RN7SKP230-201ENST00000365642 335 ntBASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 AC104784.1-201ENST00000473096 294 ntBASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
SHANK3Q9BYB0 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 AC006480.2-201ENST00000609770 1337 ntBASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms