Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 PARN-202ENST00000420015 2360 ntTSL 2 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 NAA38-207ENST00000576861 556 ntTSL 3 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 AC092902.6-201ENST00000641783 218 ntBASIC11.82□□□□□ -0.52
LINC00477Q96M19 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 POLL-217ENST00000628479 1953 ntTSL 5 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 ABR-205ENST00000544583 5595 ntTSL 2 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 RNF34-208ENST00000555076 593 ntTSL 3 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 LINC01225-203ENST00000563550 1244 ntBASIC11.81□□□□□ -0.52
LINC00477Q96M19 AC040169.1-201ENST00000565382 521 ntBASIC11.81□□□□□ -0.52
LINC00477Q96M19 SSH2-211ENST00000590153 570 ntTSL 4 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 KLK8-205ENST00000593490 267 ntTSL 3 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00477Q96M19 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC11.81□□□□□ -0.52
LINC00477Q96M19 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 LINC01101-201ENST00000622953 1884 ntBASIC11.8□□□□□ -0.52
LINC00477Q96M19 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC11.8□□□□□ -0.52
LINC00477Q96M19 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
LINC00477Q96M19 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms