Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14□□□□□ -0.17
RFT1Q96AA3 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
RFT1Q96AA3 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFT1Q96AA3 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
RFT1Q96AA3 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14□□□□□ -0.17
RFT1Q96AA3 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14□□□□□ -0.17
RFT1Q96AA3 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 CD63-210ENST00000550776 870 ntTSL 5 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 LITAF-211ENST00000572255 516 ntTSL 4 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 AC104692.2-201ENST00000603054 253 ntBASIC13.99□□□□□ -0.17
RFT1Q96AA3 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC13.99□□□□□ -0.17
RFT1Q96AA3 FGD5P1-202ENST00000614866 2498 ntBASIC13.99□□□□□ -0.17
RFT1Q96AA3 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFT1Q96AA3 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 VMO1-203ENST00000416307 712 ntTSL 2 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 HCG4B-203ENST00000450128 991 ntBASIC13.98□□□□□ -0.17
RFT1Q96AA3 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 AC093909.1-201ENST00000504731 1122 ntBASIC13.98□□□□□ -0.17
RFT1Q96AA3 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 AP001005.1-201ENST00000571755 1248 ntBASIC13.98□□□□□ -0.17
RFT1Q96AA3 CD7-202ENST00000578509 925 ntTSL 3 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC13.98□□□□□ -0.17
RFT1Q96AA3 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFT1Q96AA3 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms