Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.23■□□□□ 0.03
LMX1AQ8TE12 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 ACKR1-201ENST00000368121 1240 ntBASIC15.22■□□□□ 0.03
LMX1AQ8TE12 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 BRWD1P1-201ENST00000401091 371 ntBASIC15.22■□□□□ 0.03
LMX1AQ8TE12 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 AC022137.2-201ENST00000503482 481 ntBASIC15.22■□□□□ 0.03
LMX1AQ8TE12 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
LMX1AQ8TE12 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.21■□□□□ 0.03
LMX1AQ8TE12 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 APOC3-202ENST00000375345 604 ntTSL 5 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 ACTBP11-201ENST00000436287 1126 ntBASIC15.21■□□□□ 0.03
LMX1AQ8TE12 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 PACS1-203ENST00000524815 628 ntTSL 4 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 MIR4525-201ENST00000580000 75 ntBASIC15.21■□□□□ 0.03
LMX1AQ8TE12 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
LMX1AQ8TE12 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
LMX1AQ8TE12 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
LMX1AQ8TE12 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms