Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 AL512652.2-201ENST00000625156 1716 ntBASIC4.9□□□□□ -1.63
SYNE1Q8NF91 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 ELN-201ENST00000252034 3781 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
SYNE1Q8NF91 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 TBC1D13-202ENST00000372648 3906 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 AC092658.1-201ENST00000505836 891 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 CLUHP6-201ENST00000580789 941 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 MYO15B-237ENST00000642007 4893 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 HLA-H-201ENST00000383620 1096 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 MIR8072-201ENST00000614241 80 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 AC010491.1-201ENST00000563101 2797 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 AC060834.1-201ENST00000443027 2032 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 MAMDC4-201ENST00000317446 3658 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 ACTBP11-201ENST00000436287 1126 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 GIMAP3P-201ENST00000495150 836 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 AC023310.3-201ENST00000557027 670 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 AC100756.1-201ENST00000562736 682 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 AC138749.3-201ENST00000567691 622 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 AC116165.1-201ENST00000611806 668 ntBASIC4.89□□□□□ -1.63
SYNE1Q8NF91 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC4.89□□□□□ -1.63
SYNE1Q8NF91 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms