Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 AC005089.1-201ENST00000619486 2241 ntBASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 IGLL3P-201ENST00000412472 434 ntBASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 ACTG1P14-201ENST00000446382 1122 ntBASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 SNHG9-202ENST00000564014 471 ntBASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 AL365330.1-201ENST00000607459 531 ntBASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 AL513190.1-201ENST00000621254 727 ntBASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 AC092865.6-201ENST00000642101 219 ntBASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 CICP23-201ENST00000605013 2741 ntBASIC14.72□□□□□ -0.05
DEPDC4Q8N2C3 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 AC012569.1-201ENST00000591191 1524 ntBASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 AC107918.4-201ENST00000641966 3141 ntBASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 HTR5BP-201ENST00000430851 1154 ntBASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
DEPDC4Q8N2C3 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms