Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 AL512384.1-201ENST00000406683 331 ntBASIC14.62□□□□□ -0.07
BEST3Q8N1M1 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 AC074338.1-201ENST00000416825 156 ntBASIC14.62□□□□□ -0.07
BEST3Q8N1M1 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 RPL13P2-201ENST00000440687 659 ntBASIC14.62□□□□□ -0.07
BEST3Q8N1M1 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 GIMAP3P-201ENST00000495150 836 ntBASIC14.62□□□□□ -0.07
BEST3Q8N1M1 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 RRP7BP-205ENST00000566851 833 ntBASIC14.62□□□□□ -0.07
BEST3Q8N1M1 AC132938.2-201ENST00000579188 680 ntBASIC14.62□□□□□ -0.07
BEST3Q8N1M1 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 AL591163.1-201ENST00000641757 987 ntBASIC14.62□□□□□ -0.07
BEST3Q8N1M1 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 CLK3P2-201ENST00000427566 1453 ntBASIC14.62□□□□□ -0.07
BEST3Q8N1M1 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.62□□□□□ -0.07
BEST3Q8N1M1 REXO1L1P-202ENST00000608646 1974 ntBASIC14.62□□□□□ -0.07
BEST3Q8N1M1 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 AC092364.2-201ENST00000596710 2692 ntBASIC14.61□□□□□ -0.07
BEST3Q8N1M1 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 PHKG1P2-201ENST00000457537 863 ntBASIC14.61□□□□□ -0.07
BEST3Q8N1M1 AC104596.2-201ENST00000512793 793 ntBASIC14.61□□□□□ -0.07
BEST3Q8N1M1 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
BEST3Q8N1M1 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
BEST3Q8N1M1 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
BEST3Q8N1M1 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
BEST3Q8N1M1 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
BEST3Q8N1M1 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
BEST3Q8N1M1 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms