Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 RPL28-203ENST00000428193 573 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 AC093433.1-201ENST00000458048 571 ntBASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 AC119751.2-201ENST00000504529 210 ntBASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 AP001889.1-201ENST00000525414 633 ntBASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 PTP4A1P2-201ENST00000546033 454 ntBASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 RPL28-207ENST00000558815 616 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 AP001063.1-201ENST00000568332 529 ntBASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 IFT20-206ENST00000578122 834 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 IFT20-208ENST00000578985 831 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 GPR39-203ENST00000622084 900 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC60Q8IWA6 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 ANKRD19P-201ENST00000338192 862 ntBASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 BCRP2-202ENST00000447763 634 ntBASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 BCRP6-201ENST00000510112 632 ntBASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 BCRP7-201ENST00000511549 544 ntBASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 AC084364.1-201ENST00000551967 1556 ntBASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 FER1L4-210ENST00000615531 5998 ntBASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC60Q8IWA6 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
CCDC60Q8IWA6 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.33■□□□□ 0.37
CCDC60Q8IWA6 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC60Q8IWA6 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC60Q8IWA6 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC60Q8IWA6 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC60Q8IWA6 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CCDC60Q8IWA6 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC60Q8IWA6 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC60Q8IWA6 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC60Q8IWA6 MIR658-201ENST00000385210 100 ntBASIC17.33■□□□□ 0.36
CCDC60Q8IWA6 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
CCDC60Q8IWA6 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CCDC60Q8IWA6 AC234783.1-201ENST00000441761 496 ntBASIC17.33■□□□□ 0.36
CCDC60Q8IWA6 AC012441.1-201ENST00000446669 685 ntBASIC17.33■□□□□ 0.36
CCDC60Q8IWA6 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms