Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFWD3Q6PCD5 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFWD3Q6PCD5 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFWD3Q6PCD5 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
RFWD3Q6PCD5 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.4■□□□□ 0.22
RFWD3Q6PCD5 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFWD3Q6PCD5 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFWD3Q6PCD5 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFWD3Q6PCD5 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFWD3Q6PCD5 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.4■□□□□ 0.22
RFWD3Q6PCD5 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFWD3Q6PCD5 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.4■□□□□ 0.22
RFWD3Q6PCD5 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
RFWD3Q6PCD5 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 AC023310.3-201ENST00000557027 670 ntBASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 AC100756.1-201ENST00000562736 682 ntBASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 AC138749.3-201ENST00000567691 622 ntBASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 AC116165.1-201ENST00000611806 668 ntBASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 AL662799.1-202ENST00000614205 422 ntBASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RFWD3Q6PCD5 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 API5-211ENST00000534695 560 ntTSL 5 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 TPRX2P-201ENST00000535362 881 ntBASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 TIMM17BP1-201ENST00000545713 516 ntBASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 HNRNPUP1-201ENST00000554987 333 ntBASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 SPDYE22P-201ENST00000582158 798 ntBASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFWD3Q6PCD5 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
RFWD3Q6PCD5 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.37■□□□□ 0.21
RFWD3Q6PCD5 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFWD3Q6PCD5 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFWD3Q6PCD5 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RFWD3Q6PCD5 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms