Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NIPAL3Q6P499 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
NIPAL3Q6P499 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NIPAL3Q6P499 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NIPAL3Q6P499 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NIPAL3Q6P499 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NIPAL3Q6P499 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NIPAL3Q6P499 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.35□□□□□ -0.11
NIPAL3Q6P499 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NIPAL3Q6P499 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 AC109322.1-201ENST00000524499 1264 ntBASIC14.34□□□□□ -0.11
NIPAL3Q6P499 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 AC026979.3-201ENST00000607315 403 ntBASIC14.34□□□□□ -0.11
NIPAL3Q6P499 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 AP001059.3-201ENST00000619053 235 ntBASIC14.34□□□□□ -0.11
NIPAL3Q6P499 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NIPAL3Q6P499 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
NIPAL3Q6P499 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
NIPAL3Q6P499 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
NIPAL3Q6P499 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.33□□□□□ -0.11
NIPAL3Q6P499 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
NIPAL3Q6P499 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
NIPAL3Q6P499 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
NIPAL3Q6P499 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
NIPAL3Q6P499 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
NIPAL3Q6P499 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 AC018892.3-201ENST00000623986 2499 ntBASIC14.33□□□□□ -0.12
NIPAL3Q6P499 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 AL139400.1-201ENST00000366220 510 ntBASIC14.33□□□□□ -0.12
NIPAL3Q6P499 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 HLA-J-203ENST00000494367 1087 ntBASIC14.33□□□□□ -0.12
NIPAL3Q6P499 MIR4453-201ENST00000584019 89 ntBASIC14.33□□□□□ -0.12
NIPAL3Q6P499 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
NIPAL3Q6P499 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms