Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 AC006538.3-201ENST00000612495 578 ntBASIC15.17■□□□□ 0.02
HMGCS1Q01581 AC134684.3-201ENST00000641758 218 ntBASIC15.17■□□□□ 0.02
HMGCS1Q01581 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGCS1Q01581 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
HMGCS1Q01581 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 AC136604.1-201ENST00000418535 575 ntBASIC15.16■□□□□ 0.02
HMGCS1Q01581 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 AC004967.1-201ENST00000453589 447 ntBASIC15.16■□□□□ 0.02
HMGCS1Q01581 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 AC026150.2-201ENST00000564693 1156 ntBASIC15.16■□□□□ 0.02
HMGCS1Q01581 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 AL161772.1-201ENST00000610494 4412 ntBASIC15.16■□□□□ 0.02
HMGCS1Q01581 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
HMGCS1Q01581 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
HMGCS1Q01581 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.15■□□□□ 0.02
HMGCS1Q01581 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGCS1Q01581 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGCS1Q01581 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGCS1Q01581 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
HMGCS1Q01581 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGCS1Q01581 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.15■□□□□ 0.02
HMGCS1Q01581 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.15■□□□□ 0.02
HMGCS1Q01581 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 AP006288.1-201ENST00000446065 395 ntBASIC15.15■□□□□ 0.02
HMGCS1Q01581 AP000344.2-201ENST00000512987 629 ntBASIC15.15■□□□□ 0.02
HMGCS1Q01581 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.15■□□□□ 0.02
HMGCS1Q01581 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.15■□□□□ 0.02
HMGCS1Q01581 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGCS1Q01581 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 AC004835.2-201ENST00000603762 682 ntBASIC15.15■□□□□ 0.02
HMGCS1Q01581 AL691403.2-201ENST00000618460 490 ntBASIC15.15■□□□□ 0.02
HMGCS1Q01581 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.15■□□□□ 0.02
HMGCS1Q01581 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HMGCS1Q01581 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.15■□□□□ 0.02
HMGCS1Q01581 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.15■□□□□ 0.02
HMGCS1Q01581 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms