Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC12.72□□□□□ -0.37
CX3CL1P78423 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC12.72□□□□□ -0.37
CX3CL1P78423 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC12.72□□□□□ -0.37
CX3CL1P78423 CCDC74BP1-201ENST00000508880 1123 ntBASIC12.72□□□□□ -0.37
CX3CL1P78423 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC12.72□□□□□ -0.37
CX3CL1P78423 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC12.72□□□□□ -0.37
CX3CL1P78423 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC12.72□□□□□ -0.37
CX3CL1P78423 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC12.72□□□□□ -0.37
CX3CL1P78423 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC12.72□□□□□ -0.37
CX3CL1P78423 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC12.72□□□□□ -0.37
CX3CL1P78423 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 RN7SL828P-201ENST00000607615 303 ntBASIC12.72□□□□□ -0.37
CX3CL1P78423 GPALPP1-207ENST00000611650 899 ntBASIC12.72□□□□□ -0.37
CX3CL1P78423 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC12.72□□□□□ -0.37
CX3CL1P78423 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC12.72□□□□□ -0.37
CX3CL1P78423 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC12.72□□□□□ -0.37
CX3CL1P78423 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC12.72□□□□□ -0.37
CX3CL1P78423 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC12.72□□□□□ -0.37
CX3CL1P78423 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CX3CL1P78423 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.72□□□□□ -0.37
CX3CL1P78423 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC12.72□□□□□ -0.37
CX3CL1P78423 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC12.72□□□□□ -0.37
CX3CL1P78423 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC12.72□□□□□ -0.37
CX3CL1P78423 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
CX3CL1P78423 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC12.71□□□□□ -0.37
CX3CL1P78423 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CX3CL1P78423 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.37
CX3CL1P78423 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
CX3CL1P78423 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CX3CL1P78423 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CX3CL1P78423 RPS19-201ENST00000221975 500 ntTSL 3 BASIC12.71□□□□□ -0.37
CX3CL1P78423 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 RBM39-205ENST00000397370 612 ntTSL 2 BASIC12.71□□□□□ -0.37
CX3CL1P78423 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC12.71□□□□□ -0.37
CX3CL1P78423 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC12.71□□□□□ -0.37
CX3CL1P78423 MTND6P24-201ENST00000440466 518 ntBASIC12.71□□□□□ -0.37
CX3CL1P78423 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC12.71□□□□□ -0.37
CX3CL1P78423 BANF1P1-201ENST00000553684 263 ntBASIC12.71□□□□□ -0.37
CX3CL1P78423 COQ9-214ENST00000567933 882 ntTSL 3 BASIC12.71□□□□□ -0.37
CX3CL1P78423 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.71□□□□□ -0.37
CX3CL1P78423 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC12.71□□□□□ -0.37
CX3CL1P78423 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
CX3CL1P78423 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC12.71□□□□□ -0.37
CX3CL1P78423 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC12.71□□□□□ -0.37
CX3CL1P78423 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CX3CL1P78423 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
CX3CL1P78423 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
CX3CL1P78423 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC12.71□□□□□ -0.38
CX3CL1P78423 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC12.71□□□□□ -0.38
CX3CL1P78423 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
CX3CL1P78423 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CX3CL1P78423 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CX3CL1P78423 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CX3CL1P78423 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
CX3CL1P78423 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CX3CL1P78423 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
CX3CL1P78423 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CX3CL1P78423 REXO1L1P-202ENST00000608646 1974 ntBASIC12.7□□□□□ -0.38
CX3CL1P78423 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
CX3CL1P78423 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC12.7□□□□□ -0.38
CX3CL1P78423 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 CICP13-201ENST00000422015 2789 ntBASIC12.7□□□□□ -0.38
CX3CL1P78423 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC12.7□□□□□ -0.38
CX3CL1P78423 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
CX3CL1P78423 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CX3CL1P78423 KRT18P28-201ENST00000453838 1332 ntBASIC12.7□□□□□ -0.38
CX3CL1P78423 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
CX3CL1P78423 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
CX3CL1P78423 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms