Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
HMGCS2P54868 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 TPM3P8-201ENST00000330554 643 ntBASIC17.94■□□□□ 0.46
HMGCS2P54868 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
HMGCS2P54868 IGHJ2P-201ENST00000454480 60 ntBASIC17.94■□□□□ 0.46
HMGCS2P54868 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.94■□□□□ 0.46
HMGCS2P54868 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGCS2P54868 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
HMGCS2P54868 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGCS2P54868 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGCS2P54868 PPA1-206ENST00000625364 644 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGCS2P54868 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
HMGCS2P54868 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGCS2P54868 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
HMGCS2P54868 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
HMGCS2P54868 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGCS2P54868 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
HMGCS2P54868 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 AP003680.1-201ENST00000598970 3660 ntBASIC17.94■□□□□ 0.46
HMGCS2P54868 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
HMGCS2P54868 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGCS2P54868 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
HMGCS2P54868 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HMGCS2P54868 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
HMGCS2P54868 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.93■□□□□ 0.46
HMGCS2P54868 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGCS2P54868 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.93■□□□□ 0.46
HMGCS2P54868 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGCS2P54868 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGCS2P54868 SLC25A24P2-201ENST00000415059 510 ntBASIC17.93■□□□□ 0.46
HMGCS2P54868 AC004945.1-201ENST00000416738 983 ntBASIC17.93■□□□□ 0.46
HMGCS2P54868 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC17.93■□□□□ 0.46
HMGCS2P54868 ACTG1P17-201ENST00000558391 1119 ntBASIC17.93■□□□□ 0.46
HMGCS2P54868 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGCS2P54868 RN7SL48P-201ENST00000579283 293 ntBASIC17.93■□□□□ 0.46
HMGCS2P54868 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC17.93■□□□□ 0.46
HMGCS2P54868 AL021578.1-201ENST00000613646 709 ntBASIC17.93■□□□□ 0.46
HMGCS2P54868 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC17.93■□□□□ 0.46
HMGCS2P54868 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGCS2P54868 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGCS2P54868 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.93■□□□□ 0.46
HMGCS2P54868 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGCS2P54868 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.93■□□□□ 0.46
HMGCS2P54868 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
HMGCS2P54868 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGCS2P54868 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
HMGCS2P54868 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
HMGCS2P54868 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGCS2P54868 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGCS2P54868 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGCS2P54868 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
HMGCS2P54868 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
HMGCS2P54868 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGCS2P54868 MTHFR-217ENST00000641820 1569 ntBASIC17.92■□□□□ 0.46
HMGCS2P54868 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGCS2P54868 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
HMGCS2P54868 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC17.92■□□□□ 0.46
HMGCS2P54868 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGCS2P54868 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGCS2P54868 KRTAP10-13P-201ENST00000412914 571 ntBASIC17.92■□□□□ 0.46
HMGCS2P54868 CNN2P10-201ENST00000443067 918 ntBASIC17.92■□□□□ 0.46
HMGCS2P54868 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGCS2P54868 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC17.92■□□□□ 0.46
HMGCS2P54868 ARL16-210ENST00000574938 751 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGCS2P54868 KC6-205ENST00000599934 556 ntTSL 4 BASIC17.92■□□□□ 0.46
HMGCS2P54868 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGCS2P54868 AC244452.3-201ENST00000636814 210 ntBASIC17.92■□□□□ 0.46
HMGCS2P54868 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.92■□□□□ 0.46
HMGCS2P54868 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.92■□□□□ 0.46
HMGCS2P54868 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGCS2P54868 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms