Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 HNRNPA1P63-201ENST00000427917 963 ntBASIC16.43■□□□□ 0.22
COL4A4P53420 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC16.43■□□□□ 0.22
COL4A4P53420 SUPT4H1P2-201ENST00000501248 353 ntBASIC16.43■□□□□ 0.22
COL4A4P53420 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC16.43■□□□□ 0.22
COL4A4P53420 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.43■□□□□ 0.22
COL4A4P53420 MIR4750-201ENST00000584564 56 ntBASIC16.43■□□□□ 0.22
COL4A4P53420 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC16.43■□□□□ 0.22
COL4A4P53420 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.43■□□□□ 0.22
COL4A4P53420 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
COL4A4P53420 YRDCP1-201ENST00000621419 643 ntBASIC16.43■□□□□ 0.22
COL4A4P53420 BX539320.1-201ENST00000623759 877 ntBASIC16.43■□□□□ 0.22
COL4A4P53420 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL4A4P53420 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.43■□□□□ 0.22
COL4A4P53420 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.42■□□□□ 0.22
COL4A4P53420 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.42■□□□□ 0.22
COL4A4P53420 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 AC018695.7-201ENST00000624587 2492 ntBASIC16.42■□□□□ 0.22
COL4A4P53420 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.42■□□□□ 0.22
COL4A4P53420 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.42■□□□□ 0.22
COL4A4P53420 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.42■□□□□ 0.22
COL4A4P53420 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
COL4A4P53420 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
COL4A4P53420 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC16.42■□□□□ 0.22
COL4A4P53420 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
COL4A4P53420 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
COL4A4P53420 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.42■□□□□ 0.22
COL4A4P53420 POM121L8P-201ENST00000417732 1281 ntBASIC16.42■□□□□ 0.22
COL4A4P53420 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
COL4A4P53420 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 POM121L9P-203ENST00000441984 1285 ntBASIC16.42■□□□□ 0.22
COL4A4P53420 ATP6V0CP2-201ENST00000469409 207 ntBASIC16.42■□□□□ 0.22
COL4A4P53420 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 AC024681.1-201ENST00000521917 487 ntBASIC16.42■□□□□ 0.22
COL4A4P53420 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC16.42■□□□□ 0.22
COL4A4P53420 AP001002.3-201ENST00000623482 206 ntBASIC16.42■□□□□ 0.22
COL4A4P53420 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.42■□□□□ 0.22
COL4A4P53420 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
COL4A4P53420 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.42■□□□□ 0.22
COL4A4P53420 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A4P53420 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A4P53420 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A4P53420 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.41■□□□□ 0.22
COL4A4P53420 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A4P53420 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A4P53420 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A4P53420 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A4P53420 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
COL4A4P53420 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL4A4P53420 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A4P53420 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL4A4P53420 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
COL4A4P53420 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A4P53420 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A4P53420 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.41■□□□□ 0.22
COL4A4P53420 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
COL4A4P53420 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL4A4P53420 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.41■□□□□ 0.22
COL4A4P53420 MSRA-203ENST00000441698 788 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A4P53420 AC234782.1-201ENST00000451950 919 ntBASIC16.41■□□□□ 0.22
COL4A4P53420 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A4P53420 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A4P53420 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
COL4A4P53420 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A4P53420 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A4P53420 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A4P53420 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A4P53420 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A4P53420 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A4P53420 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A4P53420 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A4P53420 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.41■□□□□ 0.22
COL4A4P53420 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A4P53420 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.41■□□□□ 0.22
COL4A4P53420 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A4P53420 AL627389.1-201ENST00000413508 1182 ntBASIC16.4■□□□□ 0.22
COL4A4P53420 PDIA3P2-201ENST00000428073 158 ntBASIC16.4■□□□□ 0.22
COL4A4P53420 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A4P53420 EIF3FP3-201ENST00000434851 1086 ntBASIC16.4■□□□□ 0.22
COL4A4P53420 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A4P53420 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A4P53420 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A4P53420 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC16.4■□□□□ 0.22
COL4A4P53420 AC103988.2-201ENST00000561804 725 ntBASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms