Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXA1P49639 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXA1P49639 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXA1P49639 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
HOXA1P49639 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
HOXA1P49639 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC13.14□□□□□ -0.31
HOXA1P49639 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
HOXA1P49639 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 AL592424.1-201ENST00000563624 1536 ntBASIC13.14□□□□□ -0.31
HOXA1P49639 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC13.14□□□□□ -0.31
HOXA1P49639 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC13.14□□□□□ -0.31
HOXA1P49639 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC13.14□□□□□ -0.31
HOXA1P49639 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC13.14□□□□□ -0.31
HOXA1P49639 OR7E14P-202ENST00000530490 1290 ntBASIC13.14□□□□□ -0.31
HOXA1P49639 AL160237.2-201ENST00000556165 472 ntBASIC13.14□□□□□ -0.31
HOXA1P49639 NT5C-211ENST00000582170 653 ntTSL 3 BASIC13.14□□□□□ -0.31
HOXA1P49639 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
HOXA1P49639 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC13.14□□□□□ -0.31
HOXA1P49639 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
HOXA1P49639 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
HOXA1P49639 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXA1P49639 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
HOXA1P49639 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC13.13□□□□□ -0.31
HOXA1P49639 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.13□□□□□ -0.31
HOXA1P49639 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC13.13□□□□□ -0.31
HOXA1P49639 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC13.13□□□□□ -0.31
HOXA1P49639 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
HOXA1P49639 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
HOXA1P49639 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.31
HOXA1P49639 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
HOXA1P49639 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 CYP51A1P2-201ENST00000419457 1499 ntBASIC13.13□□□□□ -0.31
HOXA1P49639 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC13.13□□□□□ -0.31
HOXA1P49639 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC13.13□□□□□ -0.31
HOXA1P49639 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC13.13□□□□□ -0.31
HOXA1P49639 UPK3BP1-201ENST00000428678 509 ntBASIC13.13□□□□□ -0.31
HOXA1P49639 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC13.13□□□□□ -0.31
HOXA1P49639 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 AC073648.2-201ENST00000510116 352 ntBASIC13.13□□□□□ -0.31
HOXA1P49639 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC13.13□□□□□ -0.31
HOXA1P49639 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
HOXA1P49639 PRR29-207ENST00000580752 458 ntTSL 3 BASIC13.13□□□□□ -0.31
HOXA1P49639 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC13.13□□□□□ -0.31
HOXA1P49639 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
HOXA1P49639 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXA1P49639 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms