Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
NKX2-1P43699 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC12.93□□□□□ -0.34
NKX2-1P43699 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC12.93□□□□□ -0.34
NKX2-1P43699 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
NKX2-1P43699 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
NKX2-1P43699 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC12.93□□□□□ -0.34
NKX2-1P43699 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC12.93□□□□□ -0.34
NKX2-1P43699 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC12.92□□□□□ -0.34
NKX2-1P43699 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC12.92□□□□□ -0.34
NKX2-1P43699 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC12.92□□□□□ -0.34
NKX2-1P43699 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
NKX2-1P43699 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 USP28-214ENST00000545540 3431 ntTSL 2 BASIC12.92□□□□□ -0.34
NKX2-1P43699 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC12.92□□□□□ -0.34
NKX2-1P43699 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
NKX2-1P43699 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC12.92□□□□□ -0.34
NKX2-1P43699 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
NKX2-1P43699 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
NKX2-1P43699 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 FAM185BP-201ENST00000443595 716 ntBASIC12.92□□□□□ -0.34
NKX2-1P43699 KRT18P31-201ENST00000506277 1292 ntBASIC12.92□□□□□ -0.34
NKX2-1P43699 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC12.92□□□□□ -0.34
NKX2-1P43699 IGHV3-65-201ENST00000523210 341 ntBASIC12.92□□□□□ -0.34
NKX2-1P43699 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC12.92□□□□□ -0.34
NKX2-1P43699 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
NKX2-1P43699 AL031432.2-201ENST00000566714 459 ntBASIC12.92□□□□□ -0.34
NKX2-1P43699 AL928711.1-201ENST00000570165 459 ntBASIC12.92□□□□□ -0.34
NKX2-1P43699 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC12.92□□□□□ -0.34
NKX2-1P43699 LINC01711-201ENST00000598340 967 ntBASIC12.92□□□□□ -0.34
NKX2-1P43699 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC12.92□□□□□ -0.34
NKX2-1P43699 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC12.92□□□□□ -0.34
NKX2-1P43699 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC12.92□□□□□ -0.34
NKX2-1P43699 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC12.92□□□□□ -0.34
NKX2-1P43699 ACTL9-202ENST00000612068 1252 ntBASIC12.92□□□□□ -0.34
NKX2-1P43699 AL645728.2-201ENST00000641974 660 ntBASIC12.92□□□□□ -0.34
NKX2-1P43699 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 BANP-203ENST00000393207 2438 ntTSL 2 BASIC12.92□□□□□ -0.34
NKX2-1P43699 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC12.92□□□□□ -0.34
NKX2-1P43699 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC12.92□□□□□ -0.34
NKX2-1P43699 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
NKX2-1P43699 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
NKX2-1P43699 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC12.92□□□□□ -0.34
NKX2-1P43699 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
NKX2-1P43699 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
NKX2-1P43699 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
NKX2-1P43699 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
NKX2-1P43699 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
NKX2-1P43699 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC12.91□□□□□ -0.34
NKX2-1P43699 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC12.91□□□□□ -0.34
NKX2-1P43699 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
NKX2-1P43699 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
NKX2-1P43699 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
NKX2-1P43699 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC12.91□□□□□ -0.34
NKX2-1P43699 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC12.91□□□□□ -0.34
NKX2-1P43699 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
NKX2-1P43699 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC12.91□□□□□ -0.34
NKX2-1P43699 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
NKX2-1P43699 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
NKX2-1P43699 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
NKX2-1P43699 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
NKX2-1P43699 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
NKX2-1P43699 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
NKX2-1P43699 LSM5-204ENST00000409909 740 ntTSL 2 BASIC12.91□□□□□ -0.34
NKX2-1P43699 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
NKX2-1P43699 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC12.91□□□□□ -0.34
NKX2-1P43699 KRT18P27-201ENST00000427733 1299 ntBASIC12.91□□□□□ -0.34
NKX2-1P43699 GPX1P2-201ENST00000429271 606 ntBASIC12.91□□□□□ -0.34
NKX2-1P43699 FIS1-203ENST00000442303 631 ntTSL 3 BASIC12.91□□□□□ -0.34
NKX2-1P43699 TPM1-218ENST00000559281 851 ntTSL 5 BASIC12.91□□□□□ -0.34
NKX2-1P43699 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC12.91□□□□□ -0.34
NKX2-1P43699 PRELID1P1-202ENST00000567272 903 ntBASIC12.91□□□□□ -0.34
NKX2-1P43699 PRR29-207ENST00000580752 458 ntTSL 3 BASIC12.91□□□□□ -0.34
NKX2-1P43699 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms