Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.29■□□□□ 0.04
HNF4AP41235 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.29■□□□□ 0.04
HNF4AP41235 AC097359.3-201ENST00000603982 1210 ntBASIC15.29■□□□□ 0.04
HNF4AP41235 AL133215.2-201ENST00000609242 977 ntBASIC15.29■□□□□ 0.04
HNF4AP41235 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 AC136621.1-201ENST00000624017 2304 ntBASIC15.29■□□□□ 0.04
HNF4AP41235 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
HNF4AP41235 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HNF4AP41235 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HNF4AP41235 AC073347.1-201ENST00000421633 2643 ntBASIC15.29■□□□□ 0.04
HNF4AP41235 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HNF4AP41235 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 PPT1-215ENST00000641471 2368 ntBASIC15.28■□□□□ 0.04
HNF4AP41235 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
HNF4AP41235 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 KRT8P12-202ENST00000472924 1397 ntBASIC15.28■□□□□ 0.04
HNF4AP41235 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
HNF4AP41235 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
HNF4AP41235 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
HNF4AP41235 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
HNF4AP41235 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.28■□□□□ 0.04
HNF4AP41235 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.28■□□□□ 0.04
HNF4AP41235 AC107890.1-201ENST00000422478 521 ntBASIC15.28■□□□□ 0.04
HNF4AP41235 AL645939.2-201ENST00000427340 991 ntBASIC15.28■□□□□ 0.04
HNF4AP41235 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.28■□□□□ 0.04
HNF4AP41235 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.28■□□□□ 0.04
HNF4AP41235 DUX4L27-201ENST00000554796 1261 ntBASIC15.28■□□□□ 0.04
HNF4AP41235 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.28■□□□□ 0.04
HNF4AP41235 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.28■□□□□ 0.04
HNF4AP41235 AC093512.1-201ENST00000617969 520 ntBASIC15.28■□□□□ 0.04
HNF4AP41235 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
HNF4AP41235 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.28■□□□□ 0.04
HNF4AP41235 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
HNF4AP41235 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.28■□□□□ 0.04
HNF4AP41235 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HNF4AP41235 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HNF4AP41235 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HNF4AP41235 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HNF4AP41235 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
HNF4AP41235 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HNF4AP41235 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
HNF4AP41235 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.27■□□□□ 0.04
HNF4AP41235 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.27■□□□□ 0.04
HNF4AP41235 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HNF4AP41235 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HNF4AP41235 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
HNF4AP41235 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
HNF4AP41235 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HNF4AP41235 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.27■□□□□ 0.04
HNF4AP41235 MIR943-201ENST00000401286 94 ntBASIC15.27■□□□□ 0.04
HNF4AP41235 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.27■□□□□ 0.04
HNF4AP41235 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.27■□□□□ 0.04
HNF4AP41235 TREML5P-201ENST00000421694 576 ntBASIC15.27■□□□□ 0.04
HNF4AP41235 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HNF4AP41235 PMS2P2-201ENST00000425039 1128 ntBASIC15.27■□□□□ 0.04
HNF4AP41235 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.27■□□□□ 0.04
HNF4AP41235 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.27■□□□□ 0.04
HNF4AP41235 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.27■□□□□ 0.04
HNF4AP41235 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HNF4AP41235 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.27■□□□□ 0.04
HNF4AP41235 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.27■□□□□ 0.04
HNF4AP41235 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
HNF4AP41235 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.27■□□□□ 0.03
HNF4AP41235 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
HNF4AP41235 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.27■□□□□ 0.03
HNF4AP41235 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HNF4AP41235 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HNF4AP41235 AC007326.2-201ENST00000624224 7579 ntBASIC15.27■□□□□ 0.03
HNF4AP41235 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
HNF4AP41235 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.27■□□□□ 0.03
HNF4AP41235 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms