Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX1P28360 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX1P28360 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX1P28360 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX1P28360 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.41□□□□□ -0.1
MSX1P28360 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
MSX1P28360 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
MSX1P28360 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.4□□□□□ -0.1
MSX1P28360 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.4□□□□□ -0.1
MSX1P28360 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
MSX1P28360 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.4□□□□□ -0.1
MSX1P28360 AC103702.1-201ENST00000548801 2630 ntBASIC14.4□□□□□ -0.1
MSX1P28360 AL607033.1-201ENST00000623900 1599 ntBASIC14.4□□□□□ -0.1
MSX1P28360 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 AL391825.1-201ENST00000457671 1364 ntBASIC14.4□□□□□ -0.1
MSX1P28360 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
MSX1P28360 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
MSX1P28360 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.4□□□□□ -0.1
MSX1P28360 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
MSX1P28360 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.4□□□□□ -0.1
MSX1P28360 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC14.4□□□□□ -0.1
MSX1P28360 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 DFFBP1-201ENST00000433250 979 ntBASIC14.4□□□□□ -0.1
MSX1P28360 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
MSX1P28360 AC114501.2-201ENST00000439631 535 ntBASIC14.4□□□□□ -0.1
MSX1P28360 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.4□□□□□ -0.1
MSX1P28360 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.4□□□□□ -0.1
MSX1P28360 AC135586.1-201ENST00000539323 574 ntBASIC14.4□□□□□ -0.1
MSX1P28360 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.4□□□□□ -0.1
MSX1P28360 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.4□□□□□ -0.1
MSX1P28360 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.4□□□□□ -0.1
MSX1P28360 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.4□□□□□ -0.1
MSX1P28360 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.4□□□□□ -0.1
MSX1P28360 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
MSX1P28360 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.4□□□□□ -0.1
MSX1P28360 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
MSX1P28360 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
MSX1P28360 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
MSX1P28360 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.39□□□□□ -0.11
MSX1P28360 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.39□□□□□ -0.11
MSX1P28360 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.39□□□□□ -0.11
MSX1P28360 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.39□□□□□ -0.11
MSX1P28360 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.39□□□□□ -0.11
MSX1P28360 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.39□□□□□ -0.11
MSX1P28360 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.39□□□□□ -0.11
MSX1P28360 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.39□□□□□ -0.11
MSX1P28360 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 SLED1-202ENST00000512051 380 ntBASIC14.39□□□□□ -0.11
MSX1P28360 IGHV3-71-201ENST00000523324 359 ntBASIC14.39□□□□□ -0.11
MSX1P28360 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
MSX1P28360 TIMM17BP1-201ENST00000545713 516 ntBASIC14.39□□□□□ -0.11
MSX1P28360 AC044860.1-202ENST00000559481 777 ntBASIC14.39□□□□□ -0.11
MSX1P28360 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.39□□□□□ -0.11
MSX1P28360 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
MSX1P28360 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.39□□□□□ -0.11
MSX1P28360 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.39□□□□□ -0.11
MSX1P28360 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 AL109936.8-201ENST00000641772 604 ntBASIC14.39□□□□□ -0.11
MSX1P28360 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 AC018695.7-201ENST00000624587 2492 ntBASIC14.39□□□□□ -0.11
MSX1P28360 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.39□□□□□ -0.11
MSX1P28360 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
MSX1P28360 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
MSX1P28360 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
MSX1P28360 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms