Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC14.17□□□□□ -0.14
SPTA1P02549 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
SPTA1P02549 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC14.17□□□□□ -0.14
SPTA1P02549 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.17□□□□□ -0.14
SPTA1P02549 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC14.17□□□□□ -0.14
SPTA1P02549 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SPTA1P02549 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
SPTA1P02549 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
SPTA1P02549 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC14.17□□□□□ -0.14
SPTA1P02549 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
SPTA1P02549 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC14.16□□□□□ -0.14
SPTA1P02549 KRT18P64-201ENST00000434946 1219 ntBASIC14.16□□□□□ -0.14
SPTA1P02549 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.16□□□□□ -0.14
SPTA1P02549 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.16□□□□□ -0.14
SPTA1P02549 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.16□□□□□ -0.14
SPTA1P02549 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC14.16□□□□□ -0.14
SPTA1P02549 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC14.16□□□□□ -0.14
SPTA1P02549 AC132192.2-201ENST00000596206 1147 ntBASIC14.16□□□□□ -0.14
SPTA1P02549 AC100757.4-201ENST00000626934 759 ntBASIC14.16□□□□□ -0.14
SPTA1P02549 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.16□□□□□ -0.14
SPTA1P02549 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 EML3-212ENST00000494176 2901 ntTSL 2 BASIC14.16□□□□□ -0.14
SPTA1P02549 EML3-216ENST00000529309 2909 ntTSL 2 BASIC14.16□□□□□ -0.14
SPTA1P02549 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SPTA1P02549 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
SPTA1P02549 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC14.16□□□□□ -0.14
SPTA1P02549 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SPTA1P02549 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC14.16□□□□□ -0.14
SPTA1P02549 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SPTA1P02549 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC14.16□□□□□ -0.14
SPTA1P02549 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 NUP210P1-202ENST00000504322 710 ntBASIC14.16□□□□□ -0.14
SPTA1P02549 SDHD-202ENST00000525291 790 ntTSL 3 BASIC14.16□□□□□ -0.14
SPTA1P02549 PGAM1P5-201ENST00000548011 764 ntBASIC14.16□□□□□ -0.14
SPTA1P02549 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC14.16□□□□□ -0.14
SPTA1P02549 AC005730.2-201ENST00000564549 1184 ntBASIC14.16□□□□□ -0.14
SPTA1P02549 KLK11-210ENST00000600362 759 ntTSL 3 BASIC14.16□□□□□ -0.14
SPTA1P02549 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
SPTA1P02549 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
SPTA1P02549 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.16□□□□□ -0.14
SPTA1P02549 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
SPTA1P02549 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
SPTA1P02549 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
SPTA1P02549 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SPTA1P02549 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.15□□□□□ -0.14
SPTA1P02549 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 KRTAP19-9P-201ENST00000421795 191 ntBASIC14.15□□□□□ -0.14
SPTA1P02549 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC14.15□□□□□ -0.14
SPTA1P02549 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC14.15□□□□□ -0.14
SPTA1P02549 RNA5SP486-201ENST00000515961 83 ntBASIC14.15□□□□□ -0.14
SPTA1P02549 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC14.15□□□□□ -0.14
SPTA1P02549 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC14.15□□□□□ -0.14
SPTA1P02549 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC14.15□□□□□ -0.14
SPTA1P02549 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 RNF216P1-203ENST00000404404 2427 ntBASIC14.15□□□□□ -0.14
SPTA1P02549 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.15□□□□□ -0.14
SPTA1P02549 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.15□□□□□ -0.14
SPTA1P02549 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC14.15□□□□□ -0.14
SPTA1P02549 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.15□□□□□ -0.14
SPTA1P02549 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SPTA1P02549 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SPTA1P02549 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms