Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL3A1P02461 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
COL3A1P02461 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL3A1P02461 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC20.36■□□□□ 0.85
COL3A1P02461 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL3A1P02461 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC20.36■□□□□ 0.85
COL3A1P02461 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL3A1P02461 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
COL3A1P02461 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL3A1P02461 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC20.36■□□□□ 0.85
COL3A1P02461 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL3A1P02461 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL3A1P02461 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL3A1P02461 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
COL3A1P02461 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
COL3A1P02461 STX1A-203ENST00000395155 783 ntTSL 2 BASIC20.36■□□□□ 0.85
COL3A1P02461 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL3A1P02461 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC20.36■□□□□ 0.85
COL3A1P02461 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
COL3A1P02461 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC20.36■□□□□ 0.85
COL3A1P02461 RN7SL48P-201ENST00000579283 293 ntBASIC20.36■□□□□ 0.85
COL3A1P02461 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC20.36■□□□□ 0.85
COL3A1P02461 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC20.36■□□□□ 0.85
COL3A1P02461 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
COL3A1P02461 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
COL3A1P02461 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC20.35■□□□□ 0.85
COL3A1P02461 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 REXO1L5P-201ENST00000622260 2098 ntBASIC20.35■□□□□ 0.85
COL3A1P02461 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL3A1P02461 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC20.35■□□□□ 0.85
COL3A1P02461 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
COL3A1P02461 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC20.35■□□□□ 0.85
COL3A1P02461 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC20.35■□□□□ 0.85
COL3A1P02461 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 AC006001.1-201ENST00000325130 474 ntBASIC20.35■□□□□ 0.85
COL3A1P02461 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC20.35■□□□□ 0.85
COL3A1P02461 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC20.35■□□□□ 0.85
COL3A1P02461 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC20.35■□□□□ 0.85
COL3A1P02461 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC20.35■□□□□ 0.85
COL3A1P02461 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC20.35■□□□□ 0.85
COL3A1P02461 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
COL3A1P02461 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.35■□□□□ 0.85
COL3A1P02461 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL3A1P02461 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC20.34■□□□□ 0.85
COL3A1P02461 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC20.34■□□□□ 0.85
COL3A1P02461 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
COL3A1P02461 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC20.34■□□□□ 0.85
COL3A1P02461 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
COL3A1P02461 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.34■□□□□ 0.85
COL3A1P02461 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 AC055811.4-201ENST00000624039 1754 ntBASIC20.34■□□□□ 0.85
COL3A1P02461 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC20.34■□□□□ 0.85
COL3A1P02461 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
COL3A1P02461 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC20.34■□□□□ 0.85
COL3A1P02461 HLA-V-201ENST00000429037 534 ntBASIC20.34■□□□□ 0.85
COL3A1P02461 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC20.34■□□□□ 0.85
COL3A1P02461 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 AC106820.3-201ENST00000561653 397 ntBASIC20.34■□□□□ 0.85
COL3A1P02461 C2orf69P2-201ENST00000562032 1123 ntBASIC20.34■□□□□ 0.85
COL3A1P02461 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 ETV2-208ENST00000621247 941 ntTSL 5 BASIC20.34■□□□□ 0.85
COL3A1P02461 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
COL3A1P02461 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC20.34■□□□□ 0.85
COL3A1P02461 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL3A1P02461 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
COL3A1P02461 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
COL3A1P02461 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms