Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.28■□□□□ 0.04
LDLRP01130 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
LDLRP01130 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.28■□□□□ 0.04
LDLRP01130 KRT18P32-201ENST00000424695 1287 ntBASIC15.28■□□□□ 0.04
LDLRP01130 AL592309.1-201ENST00000443127 649 ntBASIC15.28■□□□□ 0.04
LDLRP01130 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.28■□□□□ 0.04
LDLRP01130 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.28■□□□□ 0.04
LDLRP01130 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.28■□□□□ 0.04
LDLRP01130 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
LDLRP01130 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LDLRP01130 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 AC008677.1-201ENST00000519230 1561 ntBASIC15.28■□□□□ 0.04
LDLRP01130 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LDLRP01130 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDLRP01130 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.27■□□□□ 0.04
LDLRP01130 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDLRP01130 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.27■□□□□ 0.04
LDLRP01130 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.27■□□□□ 0.04
LDLRP01130 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.27■□□□□ 0.04
LDLRP01130 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDLRP01130 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDLRP01130 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDLRP01130 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
LDLRP01130 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
LDLRP01130 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LDLRP01130 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDLRP01130 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
LDLRP01130 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDLRP01130 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LDLRP01130 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.27■□□□□ 0.04
LDLRP01130 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDLRP01130 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LDLRP01130 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LDLRP01130 RAC2-204ENST00000406508 893 ntTSL 5 BASIC15.27■□□□□ 0.04
LDLRP01130 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.27■□□□□ 0.04
LDLRP01130 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.27■□□□□ 0.04
LDLRP01130 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.27■□□□□ 0.04
LDLRP01130 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.27■□□□□ 0.04
LDLRP01130 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.27■□□□□ 0.04
LDLRP01130 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.27■□□□□ 0.04
LDLRP01130 CR383656.12-201ENST00000549567 513 ntBASIC15.27■□□□□ 0.04
LDLRP01130 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.27■□□□□ 0.04
LDLRP01130 AC099522.2-201ENST00000607001 744 ntBASIC15.27■□□□□ 0.04
LDLRP01130 ACTL9-202ENST00000612068 1252 ntBASIC15.27■□□□□ 0.04
LDLRP01130 AL358472.5-202ENST00000641448 1267 ntBASIC15.27■□□□□ 0.04
LDLRP01130 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.27■□□□□ 0.03
LDLRP01130 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
LDLRP01130 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.27■□□□□ 0.03
LDLRP01130 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LDLRP01130 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDLRP01130 CICP13-201ENST00000422015 2789 ntBASIC15.27■□□□□ 0.03
LDLRP01130 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LDLRP01130 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.27■□□□□ 0.03
LDLRP01130 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.27■□□□□ 0.03
LDLRP01130 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDLRP01130 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDLRP01130 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LDLRP01130 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.26■□□□□ 0.03
LDLRP01130 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
LDLRP01130 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.26■□□□□ 0.03
LDLRP01130 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
LDLRP01130 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.26■□□□□ 0.03
LDLRP01130 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.26■□□□□ 0.03
LDLRP01130 SLC22A20-204ENST00000530038 1673 ntBASIC15.26■□□□□ 0.03
LDLRP01130 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.26■□□□□ 0.03
LDLRP01130 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 AC106881.1-201ENST00000605849 3329 ntBASIC15.26■□□□□ 0.03
LDLRP01130 SBF1P1-201ENST00000444527 5631 ntBASIC15.26■□□□□ 0.03
LDLRP01130 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.26■□□□□ 0.03
LDLRP01130 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.26■□□□□ 0.03
LDLRP01130 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LDLRP01130 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms