Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
MBD4O95243 AC084364.1-201ENST00000551967 1556 ntBASIC18.65■□□□□ 0.58
MBD4O95243 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.65■□□□□ 0.58
MBD4O95243 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MBD4O95243 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MBD4O95243 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
MBD4O95243 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MBD4O95243 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MBD4O95243 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MBD4O95243 TTTY23B-201ENST00000442790 549 ntBASIC18.65■□□□□ 0.58
MBD4O95243 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC18.65■□□□□ 0.58
MBD4O95243 AC026410.3-201ENST00000514280 936 ntBASIC18.65■□□□□ 0.58
MBD4O95243 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC18.65■□□□□ 0.58
MBD4O95243 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.65■□□□□ 0.58
MBD4O95243 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.65■□□□□ 0.58
MBD4O95243 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MBD4O95243 AC025181.2-201ENST00000606994 802 ntBASIC18.65■□□□□ 0.58
MBD4O95243 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
MBD4O95243 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MBD4O95243 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MBD4O95243 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.65■□□□□ 0.58
MBD4O95243 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.65■□□□□ 0.58
MBD4O95243 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MBD4O95243 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MBD4O95243 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MBD4O95243 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.65■□□□□ 0.58
MBD4O95243 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC18.65■□□□□ 0.58
MBD4O95243 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
MBD4O95243 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
MBD4O95243 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
MBD4O95243 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
MBD4O95243 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
MBD4O95243 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.64■□□□□ 0.58
MBD4O95243 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.64■□□□□ 0.57
MBD4O95243 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MBD4O95243 AMT-224ENST00000635808 1610 ntTSL 5 BASIC18.64■□□□□ 0.57
MBD4O95243 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.64■□□□□ 0.57
MBD4O95243 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
MBD4O95243 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MBD4O95243 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
MBD4O95243 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
MBD4O95243 SOCS2P1-201ENST00000417727 557 ntBASIC18.64■□□□□ 0.57
MBD4O95243 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC18.64■□□□□ 0.57
MBD4O95243 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
MBD4O95243 AL162726.2-201ENST00000438986 1017 ntBASIC18.64■□□□□ 0.57
MBD4O95243 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC18.64■□□□□ 0.57
MBD4O95243 AC010319.3-201ENST00000597028 470 ntBASIC18.64■□□□□ 0.57
MBD4O95243 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
MBD4O95243 ABBA01031660.1-201ENST00000635219 756 ntBASIC18.64■□□□□ 0.57
MBD4O95243 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.64■□□□□ 0.57
MBD4O95243 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MBD4O95243 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
MBD4O95243 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
MBD4O95243 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MBD4O95243 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
MBD4O95243 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MBD4O95243 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
MBD4O95243 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
MBD4O95243 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.64■□□□□ 0.57
MBD4O95243 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
MBD4O95243 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
MBD4O95243 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MBD4O95243 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.64■□□□□ 0.57
MBD4O95243 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC18.64■□□□□ 0.57
MBD4O95243 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
MBD4O95243 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.64■□□□□ 0.57
MBD4O95243 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC18.64■□□□□ 0.57
MBD4O95243 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.63■□□□□ 0.57
MBD4O95243 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MBD4O95243 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
MBD4O95243 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18.63■□□□□ 0.57
MBD4O95243 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18.63■□□□□ 0.57
MBD4O95243 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MBD4O95243 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MBD4O95243 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC18.63■□□□□ 0.57
MBD4O95243 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC18.63■□□□□ 0.57
MBD4O95243 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC18.63■□□□□ 0.57
MBD4O95243 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MBD4O95243 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC18.63■□□□□ 0.57
MBD4O95243 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC18.63■□□□□ 0.57
MBD4O95243 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC18.63■□□□□ 0.57
MBD4O95243 GAPDHP40-201ENST00000505218 1006 ntBASIC18.63■□□□□ 0.57
MBD4O95243 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC18.63■□□□□ 0.57
MBD4O95243 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.63■□□□□ 0.57
MBD4O95243 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.63■□□□□ 0.57
MBD4O95243 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MBD4O95243 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
MBD4O95243 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MBD4O95243 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.63■□□□□ 0.57
MBD4O95243 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MBD4O95243 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
MBD4O95243 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MBD4O95243 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
MBD4O95243 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MBD4O95243 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MBD4O95243 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 HYMAI-201ENST00000635591 3347 ntBASIC18.62■□□□□ 0.57
MBD4O95243 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms