Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 MIR4313-201ENST00000580760 101 ntBASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 LINC01115-203ENST00000606068 577 ntBASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
TRIM39Q9HCM9 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 SPDYE19P-201ENST00000338590 713 ntBASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 CALY-203ENST00000368558 825 ntTSL 5 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 PIN1P1-201ENST00000412108 996 ntBASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 GNAQP1-201ENST00000444815 1067 ntBASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 MEIS3P1-201ENST00000495167 958 ntBASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 AF228730.6-201ENST00000641497 218 ntBASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 AC084121.3-201ENST00000641716 218 ntBASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM39Q9HCM9 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM39Q9HCM9 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms