Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 RPSAP43-201ENST00000402237 625 ntBASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 RPS8P6-201ENST00000426177 609 ntBASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 DNAJB3-201ENST00000446806 729 ntBASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 RN7SL589P-201ENST00000481268 310 ntBASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 AC243562.2-201ENST00000561247 970 ntBASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
TRIM56Q9BRZ2 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 CYP4F24P-201ENST00000586049 1580 ntBASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.09■□□□□ 0.17
TRIM56Q9BRZ2 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms