Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CHMP4CQ96CF2 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 AL589987.1-201ENST00000453380 819 ntBASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.78■□□□□ 0.6
CHMP4CQ96CF2 AC020658.6-201ENST00000623564 1870 ntBASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 TAF8-206ENST00000472818 719 ntTSL 2 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 AL033527.5-202ENST00000641632 1098 ntBASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 KRT8P12-202ENST00000472924 1397 ntBASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC18.77■□□□□ 0.6
CHMP4CQ96CF2 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18.77■□□□□ 0.59
CHMP4CQ96CF2 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CHMP4CQ96CF2 TMBIM7P-203ENST00000641617 1718 ntBASIC18.77■□□□□ 0.59
CHMP4CQ96CF2 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
CHMP4CQ96CF2 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.77■□□□□ 0.59
CHMP4CQ96CF2 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CHMP4CQ96CF2 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CHMP4CQ96CF2 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 PAUPAR-201ENST00000630360 2965 ntBASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 AP005018.1-201ENST00000525475 301 ntBASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 AC190387.1-201ENST00000551683 408 ntBASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC18.76■□□□□ 0.59
CHMP4CQ96CF2 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms