Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TTC28Q96AY4 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TTC28Q96AY4 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TTC28Q96AY4 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
TTC28Q96AY4 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TTC28Q96AY4 FAM197Y6-201ENST00000420524 766 ntBASIC15.53■□□□□ 0.08
TTC28Q96AY4 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.53■□□□□ 0.08
TTC28Q96AY4 PGAM1P12-201ENST00000505622 748 ntBASIC15.53■□□□□ 0.08
TTC28Q96AY4 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TTC28Q96AY4 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC15.53■□□□□ 0.08
TTC28Q96AY4 AP005264.6-204ENST00000588436 719 ntBASIC15.53■□□□□ 0.08
TTC28Q96AY4 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.53■□□□□ 0.08
TTC28Q96AY4 LINC02012-201ENST00000608206 1725 ntBASIC15.53■□□□□ 0.08
TTC28Q96AY4 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TTC28Q96AY4 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC15.53■□□□□ 0.08
TTC28Q96AY4 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC15.53■□□□□ 0.08
TTC28Q96AY4 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
TTC28Q96AY4 AL109809.1-201ENST00000418979 1367 ntBASIC15.53■□□□□ 0.08
TTC28Q96AY4 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TTC28Q96AY4 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TTC28Q96AY4 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
TTC28Q96AY4 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
TTC28Q96AY4 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TTC28Q96AY4 KRT8P14-201ENST00000414254 1442 ntBASIC15.53■□□□□ 0.08
TTC28Q96AY4 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC15.53■□□□□ 0.08
TTC28Q96AY4 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TTC28Q96AY4 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
TTC28Q96AY4 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
TTC28Q96AY4 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.53■□□□□ 0.08
TTC28Q96AY4 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.53■□□□□ 0.08
TTC28Q96AY4 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
TTC28Q96AY4 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TTC28Q96AY4 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TTC28Q96AY4 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
TTC28Q96AY4 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.08
TTC28Q96AY4 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
TTC28Q96AY4 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
TTC28Q96AY4 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
TTC28Q96AY4 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC15.52■□□□□ 0.08
TTC28Q96AY4 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TTC28Q96AY4 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC15.52■□□□□ 0.08
TTC28Q96AY4 NEU3-207ENST00000534628 746 ntTSL 2 BASIC15.52■□□□□ 0.08
TTC28Q96AY4 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC15.52■□□□□ 0.08
TTC28Q96AY4 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC15.52■□□□□ 0.08
TTC28Q96AY4 DBP-202ENST00000593500 712 ntTSL 2 BASIC15.52■□□□□ 0.08
TTC28Q96AY4 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC15.52■□□□□ 0.08
TTC28Q96AY4 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC15.52■□□□□ 0.08
TTC28Q96AY4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TTC28Q96AY4 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.52■□□□□ 0.08
TTC28Q96AY4 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.52■□□□□ 0.08
TTC28Q96AY4 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
TTC28Q96AY4 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.52■□□□□ 0.07
TTC28Q96AY4 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TTC28Q96AY4 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TTC28Q96AY4 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
TTC28Q96AY4 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TTC28Q96AY4 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TTC28Q96AY4 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TTC28Q96AY4 AP000358.1-201ENST00000456260 156 ntBASIC15.52■□□□□ 0.07
TTC28Q96AY4 DPY19L2P5-201ENST00000456300 331 ntBASIC15.52■□□□□ 0.07
TTC28Q96AY4 RN7SL173P-201ENST00000461853 292 ntBASIC15.52■□□□□ 0.07
TTC28Q96AY4 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC15.52■□□□□ 0.07
TTC28Q96AY4 DUX4L46-201ENST00000566845 751 ntBASIC15.52■□□□□ 0.07
TTC28Q96AY4 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC15.52■□□□□ 0.07
TTC28Q96AY4 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC15.52■□□□□ 0.07
TTC28Q96AY4 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC15.52■□□□□ 0.07
TTC28Q96AY4 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.52■□□□□ 0.07
TTC28Q96AY4 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.52■□□□□ 0.07
TTC28Q96AY4 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.52■□□□□ 0.07
TTC28Q96AY4 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TTC28Q96AY4 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TTC28Q96AY4 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TTC28Q96AY4 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TTC28Q96AY4 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TTC28Q96AY4 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TTC28Q96AY4 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 AC087392.5-201ENST00000612517 489 ntBASIC15.51■□□□□ 0.07
TTC28Q96AY4 AL512324.3-201ENST00000619383 882 ntBASIC15.51■□□□□ 0.07
TTC28Q96AY4 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TTC28Q96AY4 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
TTC28Q96AY4 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TTC28Q96AY4 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms