Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 AL359258.3-201ENST00000622910 2331 ntBASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
DEPDC4Q8N2C3 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 RHOQP3-201ENST00000437982 621 ntBASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 PDPK2P-202ENST00000562415 1191 ntBASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 AC007216.2-201ENST00000562802 384 ntTSL 3 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 AC021097.1-201ENST00000607902 574 ntBASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 AC106881.1-201ENST00000605849 3329 ntBASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 AC025580.3-201ENST00000617932 1424 ntBASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 AL122018.1-201ENST00000446607 2310 ntBASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.74□□□□□ -0.05
DEPDC4Q8N2C3 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 RPS8P6-201ENST00000426177 609 ntBASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 MKNK2P1-201ENST00000437526 628 ntBASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 FAM185BP-201ENST00000443595 716 ntBASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 AC004967.1-201ENST00000453589 447 ntBASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 POLD4-207ENST00000531239 584 ntTSL 2 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 CCND1-203ENST00000536559 553 ntTSL 3 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 KRT19P2-202ENST00000557173 1012 ntBASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 Metazoa_SRP.91-201ENST00000622745 281 ntBASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
DEPDC4Q8N2C3 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms