Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 Z97205.2-201ENST00000564697 1639 ntBASIC18.99■□□□□ 0.63
VPS53Q5VIR6 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS53Q5VIR6 HYMAI-201ENST00000635591 3347 ntBASIC18.99■□□□□ 0.63
VPS53Q5VIR6 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 INGX-202ENST00000489074 768 ntBASIC18.98■□□□□ 0.63
VPS53Q5VIR6 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 AF228730.6-201ENST00000641497 218 ntBASIC18.98■□□□□ 0.63
VPS53Q5VIR6 AC084121.3-201ENST00000641716 218 ntBASIC18.98■□□□□ 0.63
VPS53Q5VIR6 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS53Q5VIR6 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 TMBIM7P-203ENST00000641617 1718 ntBASIC18.97■□□□□ 0.63
VPS53Q5VIR6 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 AL589987.1-201ENST00000453380 819 ntBASIC18.97■□□□□ 0.63
VPS53Q5VIR6 AL512638.1-201ENST00000457493 794 ntBASIC18.97■□□□□ 0.63
VPS53Q5VIR6 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 AL096865.1-201ENST00000606796 927 ntBASIC18.97■□□□□ 0.63
VPS53Q5VIR6 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 AC004461.2-201ENST00000629517 803 ntBASIC18.97■□□□□ 0.63
VPS53Q5VIR6 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 AC105250.1-201ENST00000509378 2057 ntBASIC18.97■□□□□ 0.63
VPS53Q5VIR6 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 AL596257.1-201ENST00000641463 2694 ntBASIC18.97■□□□□ 0.63
VPS53Q5VIR6 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS53Q5VIR6 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS53Q5VIR6 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms