Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC14.69□□□□□ -0.06
RFX4Q33E94 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.69□□□□□ -0.06
RFX4Q33E94 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.69□□□□□ -0.06
RFX4Q33E94 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.69□□□□□ -0.06
RFX4Q33E94 AC096734.2-201ENST00000562054 433 ntBASIC14.69□□□□□ -0.06
RFX4Q33E94 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC14.69□□□□□ -0.06
RFX4Q33E94 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
RFX4Q33E94 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
RFX4Q33E94 AL049840.3-201ENST00000602669 611 ntBASIC14.69□□□□□ -0.06
RFX4Q33E94 AL009183.1-201ENST00000603760 355 ntBASIC14.69□□□□□ -0.06
RFX4Q33E94 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC14.69□□□□□ -0.06
RFX4Q33E94 AL773604.1-201ENST00000617417 272 ntBASIC14.69□□□□□ -0.06
RFX4Q33E94 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
RFX4Q33E94 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.69□□□□□ -0.06
RFX4Q33E94 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX4Q33E94 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX4Q33E94 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.69□□□□□ -0.06
RFX4Q33E94 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
RFX4Q33E94 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
RFX4Q33E94 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC14.69□□□□□ -0.06
RFX4Q33E94 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX4Q33E94 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX4Q33E94 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.69□□□□□ -0.06
RFX4Q33E94 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.69□□□□□ -0.06
RFX4Q33E94 AC023024.2-201ENST00000623561 1993 ntBASIC14.69□□□□□ -0.06
RFX4Q33E94 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.69□□□□□ -0.06
RFX4Q33E94 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RFX4Q33E94 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.69□□□□□ -0.06
RFX4Q33E94 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
RFX4Q33E94 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.68□□□□□ -0.06
RFX4Q33E94 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
RFX4Q33E94 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.68□□□□□ -0.06
RFX4Q33E94 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.68□□□□□ -0.06
RFX4Q33E94 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC14.68□□□□□ -0.06
RFX4Q33E94 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC14.68□□□□□ -0.06
RFX4Q33E94 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 RHOQP3-201ENST00000437982 621 ntBASIC14.68□□□□□ -0.06
RFX4Q33E94 AC009947.1-201ENST00000444350 727 ntBASIC14.68□□□□□ -0.06
RFX4Q33E94 HCG4B-203ENST00000450128 991 ntBASIC14.68□□□□□ -0.06
RFX4Q33E94 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
RFX4Q33E94 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
RFX4Q33E94 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.68□□□□□ -0.06
RFX4Q33E94 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
RFX4Q33E94 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
RFX4Q33E94 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
RFX4Q33E94 AC139749.1-202ENST00000617529 3139 ntBASIC14.68□□□□□ -0.06
RFX4Q33E94 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC14.68□□□□□ -0.06
RFX4Q33E94 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.68□□□□□ -0.06
RFX4Q33E94 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
RFX4Q33E94 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.68□□□□□ -0.06
RFX4Q33E94 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.68□□□□□ -0.06
RFX4Q33E94 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX4Q33E94 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX4Q33E94 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX4Q33E94 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX4Q33E94 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX4Q33E94 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
RFX4Q33E94 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
RFX4Q33E94 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX4Q33E94 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX4Q33E94 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX4Q33E94 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
RFX4Q33E94 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
RFX4Q33E94 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX4Q33E94 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX4Q33E94 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC14.67□□□□□ -0.06
RFX4Q33E94 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.67□□□□□ -0.06
RFX4Q33E94 CICP4-201ENST00000447359 2812 ntBASIC14.67□□□□□ -0.06
RFX4Q33E94 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.67□□□□□ -0.06
RFX4Q33E94 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.67□□□□□ -0.06
RFX4Q33E94 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.67□□□□□ -0.06
RFX4Q33E94 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX4Q33E94 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX4Q33E94 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms