Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.43□□□□□ -0.1
MSX1P28360 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.43□□□□□ -0.1
MSX1P28360 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 AC138969.3-201ENST00000546612 1459 ntBASIC14.43□□□□□ -0.1
MSX1P28360 AC138932.2-201ENST00000548268 1459 ntBASIC14.43□□□□□ -0.1
MSX1P28360 AC126755.4-201ENST00000549796 1459 ntBASIC14.43□□□□□ -0.1
MSX1P28360 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
MSX1P28360 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
MSX1P28360 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX1P28360 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.42□□□□□ -0.1
MSX1P28360 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.42□□□□□ -0.1
MSX1P28360 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
MSX1P28360 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.42□□□□□ -0.1
MSX1P28360 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
MSX1P28360 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.42□□□□□ -0.1
MSX1P28360 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.42□□□□□ -0.1
MSX1P28360 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
MSX1P28360 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 U91328.1-201ENST00000437528 223 ntBASIC14.42□□□□□ -0.1
MSX1P28360 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC14.42□□□□□ -0.1
MSX1P28360 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.42□□□□□ -0.1
MSX1P28360 TARDBPP1-201ENST00000442013 1203 ntBASIC14.42□□□□□ -0.1
MSX1P28360 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.42□□□□□ -0.1
MSX1P28360 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC14.42□□□□□ -0.1
MSX1P28360 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.42□□□□□ -0.1
MSX1P28360 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.42□□□□□ -0.1
MSX1P28360 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
MSX1P28360 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.42□□□□□ -0.1
MSX1P28360 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.42□□□□□ -0.1
MSX1P28360 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.42□□□□□ -0.1
MSX1P28360 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.42□□□□□ -0.1
MSX1P28360 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.42□□□□□ -0.1
MSX1P28360 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.42□□□□□ -0.1
MSX1P28360 AC018892.3-201ENST00000623986 2499 ntBASIC14.42□□□□□ -0.1
MSX1P28360 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
MSX1P28360 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
MSX1P28360 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.42□□□□□ -0.1
MSX1P28360 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
MSX1P28360 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX1P28360 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
MSX1P28360 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX1P28360 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
MSX1P28360 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
MSX1P28360 CICP6-201ENST00000457191 2729 ntBASIC14.41□□□□□ -0.1
MSX1P28360 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX1P28360 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
MSX1P28360 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX1P28360 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX1P28360 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.41□□□□□ -0.1
MSX1P28360 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.41□□□□□ -0.1
MSX1P28360 RN7SL275P-201ENST00000582762 335 ntBASIC14.41□□□□□ -0.1
MSX1P28360 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.41□□□□□ -0.1
MSX1P28360 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.41□□□□□ -0.1
MSX1P28360 AC004840.1-201ENST00000636359 365 ntBASIC14.41□□□□□ -0.1
MSX1P28360 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.41□□□□□ -0.1
MSX1P28360 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
MSX1P28360 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
MSX1P28360 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX1P28360 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.41□□□□□ -0.1
MSX1P28360 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms