Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 AL450487.1-201ENST00000426799 995 ntBASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 CYP4F24P-201ENST00000586049 1580 ntBASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.81■□□□□ 0.12
TRIM49D1C9J1S8 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 AC232323.1-201ENST00000540724 2099 ntBASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 REXO1L5P-201ENST00000622260 2098 ntBASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 AKAP8P1-201ENST00000434743 1349 ntBASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 FAM220BP-201ENST00000377689 816 ntBASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 AL135744.1-201ENST00000565098 629 ntBASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 AC008267.7-201ENST00000624570 1194 ntBASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
TRIM49D1C9J1S8 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 MROH4P-201ENST00000431302 1578 ntBASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 AC026396.1-201ENST00000419388 421 ntBASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 EEF1DP4-201ENST00000446006 880 ntBASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 AC092865.6-201ENST00000642101 219 ntBASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms