Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 AZGP1P1-201ENST00000411909 902 ntBASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 SPDYE17-201ENST00000412399 783 ntBASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 COX10-202ENST00000429152 875 ntTSL 2 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 GPS2P2-201ENST00000430745 888 ntBASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 AP000347.1-202ENST00000435868 847 ntBASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.24□□□□□ -0.13
HIF3AQ9Y2N7 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 KRT8P44-201ENST00000441609 1350 ntBASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 AL607033.1-201ENST00000623900 1599 ntBASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 FO393414.2-201ENST00000405153 598 ntBASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 RBPMS2P1-201ENST00000437762 623 ntBASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 SPDYE14P-201ENST00000442619 822 ntBASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms