Protein–RNA interactions for Protein: Q9XRX5

HHLA3, HERV-H LTR-associating protein 3, humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HHLA3Q9XRX5 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HHLA3Q9XRX5 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC11.6□□□□□ -0.55
HHLA3Q9XRX5 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
HHLA3Q9XRX5 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
HHLA3Q9XRX5 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
HHLA3Q9XRX5 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 AC015656.1-201ENST00000624209 3578 ntBASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 PMP22-202ENST00000395936 816 ntTSL 3 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 AL671277.1-201ENST00000429656 993 ntBASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 AC087481.3-201ENST00000602886 1894 ntBASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HHLA3Q9XRX5 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
HHLA3Q9XRX5 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC11.58□□□□□ -0.55
HHLA3Q9XRX5 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
HHLA3Q9XRX5 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC11.58□□□□□ -0.55
HHLA3Q9XRX5 ARHGAP23P1-201ENST00000562773 1937 ntBASIC11.58□□□□□ -0.55
HHLA3Q9XRX5 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC11.58□□□□□ -0.55
HHLA3Q9XRX5 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 MCCD1P2-201ENST00000423228 335 ntBASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 AC004832.2-201ENST00000426397 482 ntBASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 FAM58CP-201ENST00000435741 640 ntBASIC11.58□□□□□ -0.56
HHLA3Q9XRX5 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms